SNP Profiles of TSA-664   View Data

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 1234567891011121314
_Input profile
AACCCTACGGAGCTCTTTCTAGTTCTTT
1._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
2._GC-08-175-4-18
AACCCTACGGAGCTCTTTCTAGTTCTTT
3._GC-08-174-4-17
AACCCTACGGAGCTCTTTCTAGTTCTTT
4._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
5._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
6._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
7._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
8._TSA_644
AACCCTAC____TTCTAG_CT_
9._TSA_644
AACCCTAC____TTCTAG_CT_
10._TSA_644
AACCCTAC____TTCTAG_CT_
11._TSA_644
AACCCTAC____TTCTAG_CT_
12._TSA_644
AACCCTAC____TTCTAG_CT_
13._GC-08-174-4-17
AACCTTACGGAGCTCTTTCTAGTTCTTT
14._TSA_644
AACCCTAA_____CTAG_CT_
15._GC-08-175-4-18
_CCCT_AAAATTTTTTTTAGTTCTCT
16._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
17._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
18._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
19._GC-08-174-4-17
TTCCCTACAAAATTTTTTTTAGTTCTCT
20._GC-08-174-4-17
TTCCCTACAAAATTTTTTTTAGTTCTCT
 1516171819202122232425262728
_Input profile
ATAAAAAGCGCCCGCCAACTGGATAACG
1._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
2._GC-08-175-4-18
ATAAAAAGCGCCCGCCAACTGGATAACG
3._GC-08-174-4-17
ATAAAAAGCGCCCGCCAACTGGATAACG
4._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
5._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
6._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
7._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
8._TSA_644
___AG__CG____ATAA_
9._TSA_644
___AG__CG____ATAA_
10._TSA_644
___AG__CG____ATAA_
11._TSA_644
___AG__CG____ATAA_
12._TSA_644
___AG__CG____ATAA_
13._GC-08-174-4-17
ATAAAAAGCGCCCGCCAACTGGATAACG
14._TSA_644
___AG__CG____ATAA_
15._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
16._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
17._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
18._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
19._GC-08-174-4-17
AAACAAAGCCCGCGCCAACTGGAAATGG
20._GC-08-174-4-17
AAACAAAGCCCGCGCCAACTGGAAATGG
 2930313233343536373839404142
_Input profile
CCATTTTTGGGGCCAAGGGTTTAGCCGG
1._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
2._GC-08-175-4-18
CCATTTTTGGGGCCAAGGGTTTAGCCGG
3._GC-08-174-4-17
CCATTTTTGGGGCCAAGGGTTTAGCCGG
4._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
5._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
6._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
7._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
8._TSA_644
CCAT___GG_AAGG__AG__
9._TSA_644
CCAT___GG_AAGG__AG__
10._TSA_644
CCAT___GG_AAGG__AG__
11._TSA_644
CCAT___GG_AAGG__AG__
12._TSA_644
CCAT___GG_AAGG__AG__
13._GC-08-174-4-17
CCATTTTTGGGGCCAAGGGTTTAGCCGG
14._TSA_644
CC____GG__GG__AG__
15._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
16._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
17._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
18._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
19._GC-08-174-4-17
CGATCTGTGGCGCCAAGTGTTTAGCCAG
20._GC-08-174-4-17
CGATCTGTGGCGCCAAGTGTTTAGCCAG
 4344454647484950515253545556
_Input profile
CGGGTTTTAGAGAACCAGAAGGTTTTCC
1._GC-04-034-2-16
CGGGTTTTAGAGAACCAGAAGGTTTTCC
2._GC-08-175-4-18
CGGGTTTTAGAGAACCAGAAGGTTTTCC
3._GC-08-174-4-17
CGGGTTTTAGAGAACCAGAAGGTTTTCC
4._GC-04-034-2-16
CGGGTTTTAGAGAACCAGAAGGTTTTCC
5._GC-04-034-2-16
CGGGTTTTAGAGAACCAGAAGGTTTTCC
6._GC-04-034-2-16
CGGGTTTTAGAGAACCAGAAGGTTTTCC
7._GC-04-034-2-16
CGGGTTTTAGAGAACCAGAAGG_TTCC
8._TSA_644
___TT________TTCC
9._TSA_644
___TT________TTCC
10._TSA_644
___TT________TTCC
11._TSA_644
___TT________TTCC
12._TSA_644
___TT________TTCC
13._GC-08-174-4-17
CGGGTTTTAGAGAACCAGAAGGTTTTCC
14._TSA_644
___TT________TT_
15._GC-08-175-4-18
CGGGTTCTAAAGAACCAGAAGT_TTCT
16._GC-08-175-4-18
CGGGTTCTAAAGAACCAGAAGT_TTCT
17._GC-08-175-4-18
CGGGTTCTAAAGAACCAGAAGT_TTCT
18._GC-08-175-4-18
CGGGTTCTAAAGAACCAGAAGT_TTCT
19._GC-08-174-4-17
CGGGTTCTAAAGAACCAGAAGT_TTCT
20._GC-08-174-4-17
CGGGTTCTAAAGAACCAGAAGT_TTCT
 5758596061626364656667686970
_Input profile
TTGGCCCCTTACCGGGACAGGGGGAGTT
1._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
2._GC-08-175-4-18
TTGGCCCCTTACCGGGACAGGGGGAGTT
3._GC-08-174-4-17
TTGGCCCCTTACCGGGACAGGGGGAGTT
4._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
5._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
6._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
7._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
8._TSA_644
__CC_TTACCG_ACAGGGGG__
9._TSA_644
__CC_TTACCG_ACAGGGGG__
10._TSA_644
__CC_TTACCG_ACAGGGGG__
11._TSA_644
__CC_TTACCG_ACAGGGGG__
12._TSA_644
__CC_TTACCG_ACAGGGGG__
13._GC-08-174-4-17
TTGGCCCCTTACCGGGACAGGGGGAGTT
14._TSA_644
__CC_TTACCG_ACAG_GG__
15._GC-08-175-4-18
TTGGCCCCCCCCCCGGCCAGGGGTAATT
16._GC-08-175-4-18
TTGGCCCCCCCCCCGGCCAGGGGTAATT
17._GC-08-175-4-18
TTGGCCCCCCCCCCGGCCAGGGGTAATT
18._GC-08-175-4-18
TTGGCCCCCCCCCCGGCCAGGGGTAATT
19._GC-08-174-4-17
TTGGCCCCCCCCCCGGCCAGGGGTAATT
20._GC-08-174-4-17
TTGGCCCCCCCCCCGGCCAGGGGTAATT
 7172737475767778798081828384
_Input profile
CCAACCCCAGCCCCAAACCCCCAACCCT
1._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
2._GC-08-175-4-18
CCAACCCCAGCCCCAAACCCCCAACCCT
3._GC-08-174-4-17
CCAACCCCAGCCCCAAACCCCCAACCCT
4._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
5._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
6._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
7._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
8._TSA_644
_AACC_____ACCC___CT
9._TSA_644
_AACC_____ACCC___CT
10._TSA_644
_AACC_____ACCC___CT
11._TSA_644
_AACC_____ACCC___CT
12._TSA_644
_AACC_____ACCC___CT
13._GC-08-174-4-17
CCAACCCCAGCCCCAAACCCCCAACCCT
14._TSA_644
_AGCC_____ACCC___CT
15._GC-08-175-4-18
CCAACTACAGCCACAAACCGCCAACCTT
16._GC-08-175-4-18
CCAACTACAGCCACAAACCGCCAACCTT
17._GC-08-175-4-18
CCAACTACAGCCACAAACCGCCAACCTT
18._GC-08-175-4-18
CCAACTACAGCCACAAACCGCCAACCTT
19._GC-08-174-4-17
CCAACTACAGCCACAAACCGCCAACCTT
20._GC-08-174-4-17
CCAACTACAGCCACAAACCGCCAACCTT
 85868788899091929394    
_Input profile
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
1._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
2._GC-08-175-4-18
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
3._GC-08-174-4-17
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
4._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
5._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
6._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
7._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
8._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
9._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
10._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
11._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
12._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
13._GC-08-174-4-17
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
14._TSA_644
CT____TTGTCT__X_XX_XX_XX_X
15._GC-08-175-4-18
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
16._GC-08-175-4-18
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
17._GC-08-175-4-18
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
18._GC-08-175-4-18
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
19._GC-08-174-4-17
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
20._GC-08-174-4-17
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X

Input profile: TSA_644 GC-08-174-4-17

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._TSA_644 GC-04-034-2-16

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

2._TSA_644 GC-08-175-4-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._TSA_644 GC-08-174-4-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._TSA_644 GC-04-034-2-16

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._TSA_644 GC-04-034-2-16

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

6._TSA_644 GC-04-034-2-16

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

7._TSA_644 GC-04-034-2-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 7 > FP
 Dapeng Zhang, 2016

9._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 4 > FP
 Dapeng Zhang, 2016

10._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 3 > FP
 Dapeng Zhang, 2016

11._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 2 > FP
 Dapeng Zhang, 2016

12._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._TSA_644 GC-08-174-4-17

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._TSA_644

97 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 8, Row 1 13_15
 Dapeng Zhang, 2016

15._TSA_644 GC-08-175-4-18

77.5 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._TSA_644 GC-08-175-4-18

76.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._TSA_644 GC-08-175-4-18

76.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._TSA_644 GC-08-175-4-18

76.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._TSA_644 GC-08-174-4-17

76.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._TSA_644 GC-08-174-4-17

76.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240