SNP Profiles of TSA-664   View Data

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 1234567891011121314
_Input profile
TTCCCTACAAAATTTTTTTTAGTTCTCT
1._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
2._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
3._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
4._GC-08-174-4-17
TTCCCTACAAAATTTTTTTTAGTTCTCT
5._GC-08-175-4-18
_CCCT_AAAATTTTTTTTAGTTCTCT
6._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
7._GC-08-175-4-18
AACCCTACGGAGCTCTTTCTAGTTCTTT
8._GC-08-174-4-17
AACCCTACGGAGCTCTTTCTAGTTCTTT
9._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
10._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
11._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
12._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
13._GC-08-174-4-17
AACCCTACGGAGCTCTTTCTAGTTCTTT
14._GC-08-174-4-17
AACCTTACGGAGCTCTTTCTAGTTCTTT
15._TSA_644
AACCCTAC____TTCTAG_CT_
16._TSA_644
AACCCTAC____TTCTAG_CT_
17._TSA_644
AACCCTAC____TTCTAG_CT_
18._TSA_644
AACCCTAC____TTCTAG_CT_
19._TSA_644
AACCCTAC____TTCTAG_CT_
20._TSA_644
AACCCTAA_____CTAG_CT_
 1516171819202122232425262728
_Input profile
AAACAAAGCCCGCGCCAACTGGAAATGG
1._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
2._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
3._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
4._GC-08-174-4-17
AAACAAAGCCCGCGCCAACTGGAAATGG
5._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
6._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
7._GC-08-175-4-18
ATAAAAAGCGCCCGCCAACTGGATAACG
8._GC-08-174-4-17
ATAAAAAGCGCCCGCCAACTGGATAACG
9._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
10._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
11._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
12._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
13._GC-08-174-4-17
ATAAAAAGCGCCCGCCAACTGGATAACG
14._GC-08-174-4-17
ATAAAAAGCGCCCGCCAACTGGATAACG
15._TSA_644
___AG__CG____ATAA_
16._TSA_644
___AG__CG____ATAA_
17._TSA_644
___AG__CG____ATAA_
18._TSA_644
___AG__CG____ATAA_
19._TSA_644
___AG__CG____ATAA_
20._TSA_644
___AG__CG____ATAA_
 2930313233343536373839404142
_Input profile
CGATCTGTGGCGCCAAGTGTTTAGCCAG
1._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
2._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
3._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
4._GC-08-174-4-17
CGATCTGTGGCGCCAAGTGTTTAGCCAG
5._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
6._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
7._GC-08-175-4-18
CCATTTTTGGGGCCAAGGGTTTAGCCGG
8._GC-08-174-4-17
CCATTTTTGGGGCCAAGGGTTTAGCCGG
9._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
10._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
11._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
12._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
13._GC-08-174-4-17
CCATTTTTGGGGCCAAGGGTTTAGCCGG
14._GC-08-174-4-17
CCATTTTTGGGGCCAAGGGTTTAGCCGG
15._TSA_644
CCAT___GG_AAGG__AG__
16._TSA_644
CCAT___GG_AAGG__AG__
17._TSA_644
CCAT___GG_AAGG__AG__
18._TSA_644
CCAT___GG_AAGG__AG__
19._TSA_644
CCAT___GG_AAGG__AG__
20._TSA_644
CC____GG__GG__AG__
 4344454647484950515253545556
_Input profile
CGGGTTCTAAAGAACCACAGAAGTTTCT
1._GC-08-175-4-18
CGGGTTCTAAAGAACCACAGAAGTTTCT
2._GC-08-175-4-18
CGGGTTCTAAAGAACCACAGAAGTTTCT
3._GC-08-175-4-18
CGGGTTCTAAAGAACCACAGAAGTTTCT
4._GC-08-174-4-17
CGGGTTCTAAAGAACCACAGAAGTTTCT
5._GC-08-175-4-18
CGGGTTCTAAAGAACCACAGAAGTTTCT
6._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGGTTCC
7._GC-08-175-4-18
CGGGTTTTAGAGAACCACAGAAGGTTCC
8._GC-08-174-4-17
CGGGTTTTAGAGAACCACAGAAGGTTCC
9._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGGTTCC
10._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGGTTCC
11._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGGTTCC
12._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGGTTCC
13._GC-08-174-4-17
CGGGTTTTAGAGAACC_AGAAGGTTCC
14._GC-08-174-4-17
CGGGTTTTAGAGAACCACAGAAGGTTCC
15._TSA_644
___TT________TTCC
16._TSA_644
___TT________TTCC
17._TSA_644
___TT________TTCC
18._TSA_644
___TT________TTCC
19._TSA_644
___TT________TTCC
20._TSA_644
___TT________TT_
 5758596061626364656667686970
_Input profile
TTGGCCCCCCCCCCGGCCAGGGGTAATT
1._GC-08-175-4-18
TTGGCCCCCCCCCCGGCCAGGGGTAATT
2._GC-08-175-4-18
TTGGCCCCCCCCCCGGCCAGGGGTAATT
3._GC-08-175-4-18
TTGGCCCCCCCCCCGGCCAGGGGTAATT
4._GC-08-174-4-17
TTGGCCCCCCCCCCGGCCAGGGGTAATT
5._GC-08-175-4-18
TTGGCCCCCCCCCCGGCCAGGGGTAATT
6._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
7._GC-08-175-4-18
TTGGCCCCTTACCGGGACAGGGGGAGTT
8._GC-08-174-4-17
TTGGCCCCTTACCGGGACAGGGGGAGTT
9._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
10._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
11._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
12._GC-04-034-2-16
TTGGCCCCTTACCGGGACAGGGGGAGTT
13._GC-08-174-4-17
TTGGCCCCTTACCGGGACAGGGGGAGTT
14._GC-08-174-4-17
TTGGCCCCTTACCGGGACAGGGGGAGTT
15._TSA_644
__CC_TTACCG_ACAGGGGG__
16._TSA_644
__CC_TTACCG_ACAGGGGG__
17._TSA_644
__CC_TTACCG_ACAGGGGG__
18._TSA_644
__CC_TTACCG_ACAGGGGG__
19._TSA_644
__CC_TTACCG_ACAGGGGG__
20._TSA_644
__CC_TTACCG_ACAG_GG__
 7172737475767778798081828384
_Input profile
CCAACTACAGCCACAAACCGCCAACCTT
1._GC-08-175-4-18
CCAACTACAGCCACAAACCGCCAACCTT
2._GC-08-175-4-18
CCAACTACAGCCACAAACCGCCAACCTT
3._GC-08-175-4-18
CCAACTACAGCCACAAACCGCCAACCTT
4._GC-08-174-4-17
CCAACTACAGCCACAAACCGCCAACCTT
5._GC-08-175-4-18
CCAACTACAGCCACAAACCGCCAACCTT
6._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
7._GC-08-175-4-18
CCAACCCCAGCCCCAAACCCCCAACCCT
8._GC-08-174-4-17
CCAACCCCAGCCCCAAACCCCCAACCCT
9._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
10._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
11._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
12._GC-04-034-2-16
CCAACCCCAGCCCCAAACCCCCAACCCT
13._GC-08-174-4-17
CCAACCCCAGCCCCAAACCCCCAACCCT
14._GC-08-174-4-17
CCAACCCCAGCCCCAAACCCCCAACCCT
15._TSA_644
_AACC_____ACCC___CT
16._TSA_644
_AACC_____ACCC___CT
17._TSA_644
_AACC_____ACCC___CT
18._TSA_644
_AACC_____ACCC___CT
19._TSA_644
_AACC_____ACCC___CT
20._TSA_644
_AGCC_____ACCC___CT
 85868788899091929394    
_Input profile
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
1._GC-08-175-4-18
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
2._GC-08-175-4-18
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
3._GC-08-175-4-18
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
4._GC-08-174-4-17
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
5._GC-08-175-4-18
CTCTCTAGCCCCGTCCATAGX_XX_XX_XX_X
6._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
7._GC-08-175-4-18
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
8._GC-08-174-4-17
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
9._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
10._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
11._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
12._GC-04-034-2-16
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
13._GC-08-174-4-17
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
14._GC-08-174-4-17
CTCCCTAGCCTTGTCTTTAGX_XX_XX_XX_X
15._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
16._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
17._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
18._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
19._TSA_644
CTCC_AG_TTGTCT__X_XX_XX_XX_X
20._TSA_644
CT____TTGTCT__X_XX_XX_XX_X

Input profile: TSA_644 GC-08-174-4-17

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._TSA_644 GC-08-175-4-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._TSA_644 GC-08-175-4-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._TSA_644 GC-08-175-4-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._TSA_644 GC-08-174-4-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._TSA_644 GC-08-175-4-18

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._TSA_644 GC-04-034-2-16

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

7._TSA_644 GC-08-175-4-18

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._TSA_644 GC-08-174-4-17

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._TSA_644 GC-04-034-2-16

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._TSA_644 GC-04-034-2-16

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

11._TSA_644 GC-04-034-2-16

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._TSA_644 GC-04-034-2-16

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

13._TSA_644 GC-08-174-4-17

76.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._TSA_644 GC-08-174-4-17

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._TSA_644

71.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 7 > FP
 Dapeng Zhang, 2016

16._TSA_644

71.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 4 > FP
 Dapeng Zhang, 2016

17._TSA_644

71.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 3 > FP
 Dapeng Zhang, 2016

18._TSA_644

71.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 2 > FP
 Dapeng Zhang, 2016

19._TSA_644

71.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._TSA_644

65.2 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 8, Row 1 13_15
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240