SNP Profiles of MO-20   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGAACTCTCTCTGGCTCTAA
1._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGGCTCTAA
2._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTAA
3._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTAA
4._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTAA
5._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTAA
6._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTAA
7._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGGCTCTAA
8._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGGCTCTAA
9._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTAA
10._MO_20
AAACCTCC____CTCTGGCT__
11._MO_20
AAACCTCC____CTCTGGCT__
12._MO_20
AAACCTCC____CTCTGGCT__
13._MO_20
AAACCTCC____CTCTGGCT__
14._MO_20
AAACCTCC____CTCTGGCT__
15._MO_20
AAACCTCC____CTCTGGCT__
16._MO_20
AAACCTCC____CTCTGGCT__
17._MO_20
AAACCTCC____CTCTGGCT__
18._MO_20
AAACCTCC____CTCTGGCT__
19._MO_20
AAACCTCC____CTCTGGCT__
20._MO_20
AAACCTCC____CTCTGGCT__
21._RUQ_1566
___CC__TT_______
22._RUQ_1566
___CC____CT__CT__
23._RUQ_1566
__-CC__-_-__-__
24._GC-01-121-6-18
AA_CCACGGGGCTCCCCCCGGCCTTAA
25._MO_20_Fld#_171_Plt#_1
AAAC_CCGGAA_AGAG_GGAGAGTT
26._RUQ_1566
AAAC_CCGGAA_AGAG_GGAGAGTT
27._MITC-000675
AAAC_CCGGAA_AGAG_GGAGAGTT
28._MO_20
TTCCCCCC____CCCTAGTT__
29._MO_20
AA_CCAC____CCCCGGCC__
30._MO_20_Fld#_74_Plt#_1
AAAA_CCGGAG_GGAG_GGGGGGAT
 1516171819202122232425262728
_Input profile
ACAAAGCGCGCGCCAGCTGGATAACGCG
1._GC-08-167-4-10
ACAAAGCGCGCGCCAGCTGGATAACGCG
2._GC-01-121-6-18
ACAAAGCGCGCGCCAGCTGGATAACGCG
3._GC-01-121-6-18
ACAAAGCGCGCGCCAGCTGGATAACGCG
4._GC-01-121-6-18
ACAAAGCGCGCGCCAGCTGGATAACGCG
5._GC-01-121-6-18
ACAAAGCGCGCGCCAGCTGGATAACGCG
6._GC-01-121-6-18
ACAAAGCGCGCGCCAGCTGGATAACGCG
7._GC-08-167-4-10
ACAAAGCGCGCGCCAGCTGGATAACGCG
8._GC-08-167-4-10
ACAAAGCGCGCGCCAGCTGGATAACGCG
9._GC-01-121-6-18
ACAAAGCGCGCGCCAGCTGGATAACGCG
10._MO_20
__AG__CG____ATAA_CG
11._MO_20
__AG__CG____ATAA_CG
12._MO_20
__AG__CG____ATAA_CG
13._MO_20
__AG__CG____ATAA_CG
14._MO_20
__AG__CG____ATAA_CG
15._MO_20
__AG__CG____ATAA_CG
16._MO_20
__AG__CG____ATAA_CG
17._MO_20
__AG__CG____ATAA_CG
18._MO_20
__AG__CG____ATAA_CG
19._MO_20
__AG__CG____ATAA_CG
20._MO_20
__AG__CG____ATAA_CG
21._RUQ_1566
__AGCT_________CG
22._RUQ_1566
_AA__CG_CC__GG_AACCCG
23._RUQ_1566
____-____-_---
24._GC-01-121-6-18
CC_GGGGCCGGTTAATTGGTTAACCGG
25._MO_20_Fld#_171_Plt#_1
ACAAAGCG_CGGGAAAGGGATAACGCG
26._RUQ_1566
ACAAAGCG_CGGGAAAGGGATAACGCG
27._MITC-000675
ACAAAGCG_CGGGAAAGGGATAACGCG
28._MO_20
__GG__GG____AATT_CC
29._MO_20
__GG__GG____TTAA_GG
30._MO_20_Fld#_74_Plt#_1
CCGGAACC_GGAGGGAAAGATATCGCC
 2930313233343536373839404142
_Input profile
ATTTGTAGCGCCAAGTGTTTAACTAGCC
1._GC-08-167-4-10
ATTTGTAGCGCCAAGTGTTTAACTAGCC
2._GC-01-121-6-18
ATTTGTAGCGCCAAGTGTTTAACTAGCC
3._GC-01-121-6-18
ATTTGTAGCGCCAAGTGTTTAACTAGCC
4._GC-01-121-6-18
ATTTGTAGCGCCAAGTGTTTAACTAGCC
5._GC-01-121-6-18
ATTTGTAGCGCCAAGTGTTTAACTAGCC
6._GC-01-121-6-18
ATTTGTAGCGCCAAGTGTTTAACTAGCC
7._GC-08-167-4-10
ATTTGTAGCGCCAAGTGTTTAACTAGCC
8._GC-08-167-4-10
ATTTGTAGCGCCAAGTGTTTAACTAGCC
9._GC-01-121-6-18
ATTTGTAGCGCCAAGTGTTTAACTAGCC
10._MO_20
AT___CG_AAGT__AA___
11._MO_20
AT___CG_AAGT__AA___
12._MO_20
AT___CG_AAGT__AA___
13._MO_20
AT___CG_AAGT__AA___
14._MO_20
AT___CG_AAGT__AA___
15._MO_20
AT___CG_AAGT__AA___
16._MO_20
AT___CG_AAGT__AA___
17._MO_20
AT___CG_AAGT__AA___
18._MO_20
AT___CG_AAGT__AA___
19._MO_20
AT___CG_AAGT__AA___
20._MO_20
AT___CG_AAGT__AA___
21._RUQ_1566
____CG_AA____CT__
22._RUQ_1566
___AGCG____TT_CT__
23._RUQ_1566
___GG-CC--__--__
24._GC-01-121-6-18
AATTTTGGCCCCGGTTGGGGGGCCGGCC
25._MO_20_Fld#_171_Plt#_1
ATAAACAGCGCCAAACACAAAAAGAGGG
26._RUQ_1566
ATAAACAGCGCCAAACACAAAAAGAGGG
27._MITC-000675
ATAAACAGCGCCAAACACAAAAAGAGGG
28._MO_20
TT___GG_AAGG__GG___
29._MO_20
AA___CC_GGTT__GG___
30._MO_20_Fld#_74_Plt#_1
AAAGCCAGCCCCAGACCCACAAAGAAGG
 4344454647484950515253545556
_Input profile
GTATCTGGAGAGCTACAGAGGGTTCTCT
1._GC-08-167-4-10
GTATCTGGAGAGCTACAGAGGGTTCTCT
2._GC-01-121-6-18
GTATCTGGAGAGCTACAGAGGGTTCTCT
3._GC-01-121-6-18
GTATCTGGAGAGCTACAGAGGGTTCTCT
4._GC-01-121-6-18
GTATCTGGAGAGCTACAGAGGGTTCTCT
5._GC-01-121-6-18
GTATCTGGAGAGCTACAGAGGGTTCTCT
6._GC-01-121-6-18
GTATCTGGAGAGCTACAGAGGGTTCTCT
7._GC-08-167-4-10
GTATCTGGAGAGCTACAGAGGGTTCTCT
8._GC-08-167-4-10
GTATCTGGAGAGCTACAGAGGGTTCTCT
9._GC-01-121-6-18
GTATCTGGAGAGCTACAGAGGGTTCTCT
10._MO_20
__CT_________CTCT
11._MO_20
__CT_________CTCT
12._MO_20
__CT_________CTCT
13._MO_20
__CT_________CTCT
14._MO_20
__CT_________CTCT
15._MO_20
__CT_________CTCT
16._MO_20
__CT_________CTCT
17._MO_20
__CT_________CTCT
18._MO_20
__CT_________CTCT
19._MO_20
__CT_________CTCT
20._MO_20
__CT_________CTCT
21._RUQ_1566
____AG_________
22._RUQ_1566
_AT_GG________CT_
23._RUQ_1566
GG-__-______--_
24._GC-01-121-6-18
GGTTTTAAGGAACCCCGGGGTTTTTTCC
25._MO_20_Fld#_171_Plt#_1
AC_AG_AGAGAG_AGAGCCAGAGAG
26._RUQ_1566
AC_AG_AGAGAG_AGAGCCAGAGAG
27._MITC-000675
AC_AG_AGAGAG_AGAGCCAGAGAG
28._MO_20
__TT_________TTCC
29._MO_20
__TT_________TTCC
30._MO_20_Fld#_74_Plt#_1
CC_GG_GGAAAG_GGGGACAAAGAG
 5758596061626364656667686970
_Input profile
TTAGCCCTTTACCGAGACAGGTGGAGTT
1._GC-08-167-4-10
TTAGCCCTTTACCGAGACAGGTGGAGTT
2._GC-01-121-6-18
TTAGCCCTTTACCGAGACAGGTGGAGTT
3._GC-01-121-6-18
TTAGCCCTTTACCGAGACAGGTGGAGTT
4._GC-01-121-6-18
TTAGCCCTTTACCGAGACAGGTGGAGTT
5._GC-01-121-6-18
TTAGCCCTTTACCGAGACAGGTGGAGTT
6._GC-01-121-6-18
TTAGCCCTTTACCGAGACAGGTGGAGTT
7._GC-08-167-4-10
TTAGCCCTTTACCGAGACAGGTGGAGTT
8._GC-08-167-4-10
TTAGCCCTTTACCGAGACAGGTGGAGTT
9._GC-01-121-6-18
TTAGCC_TTACCGAGACAGGTGGAGTT
10._MO_20
__CC_TTACCG_ACAGGTGG__
11._MO_20
__CC_TTACCG_ACAGGTGG__
12._MO_20
__CC_TTACCG_ACAGGTGG__
13._MO_20
__CC_TTACCG_ACAGGTGG__
14._MO_20
__CC_TTACCG_ACAGGTGG__
15._MO_20
__CC_TTACCG_ACAGGTGG__
16._MO_20
__CC_TTACCG_ACAGGTGG__
17._MO_20
__CC_TTACCG_ACAGGTGG__
18._MO_20
__CC_TTACCG_ACAGGTGG__
19._MO_20
__CC_TTACCG_ACAGGTGG__
20._MO_20
__CC_TTACCG_ACAGGTGG__
21._RUQ_1566
_AG______ACAG_GGAG_
22._RUQ_1566
__GGCT_AC_AGCCAG____
23._RUQ_1566
--CCCCTT-_---GG--_
24._GC-01-121-6-18
TTGGCCCCCCAAGGGGAAGGGGGGAACC
25._MO_20_Fld#_171_Plt#_1
AAAGGGAGAAACCGAGACAGACCCAG_
26._RUQ_1566
AAAGGGAGAAACCGAG_AGACCCAG_
27._MITC-000675
AAAGGGAGAAACCGAG_AGACCCAG_
28._MO_20
__CC_TTCCCC_CCAAGGGT__
29._MO_20
__CC_CCAAGG_AAGGGGGG__
30._MO_20_Fld#_74_Plt#_1
AAAGGGAGAGAAGGGGCCAAAACCGG_
 7172737475767778798081828384
_Input profile
CCAACTACGGCCACAGACCCCCATCCTT
1._GC-08-167-4-10
CCAACTACGGCCACAGACCCCCATCCTT
2._GC-01-121-6-18
CCAACTACGGCCACAGACCCCCATCCTT
3._GC-01-121-6-18
CCAACTACGGCCACAGACCCCCATCCTT
4._GC-01-121-6-18
CCAACTACGGCCACAGACCCCCATCCTT
5._GC-01-121-6-18
CCAACTACGGCCACAGACCCCCATCCTT
6._GC-01-121-6-18
CCAACTACGGCCACAGACCCCCATCCTT
7._GC-08-167-4-10
CCAACTACGGCCACAGACCCCCATCCTT
8._GC-08-167-4-10
CCAACTACGGCCACAGACCCCCATCCTT
9._GC-01-121-6-18
CC_CTACGGCCACAGACCCCCATCCTT
10._MO_20
_AACT_____ACCC___TT
11._MO_20
_AACT_____ACCC___TT
12._MO_20
_AACT_____ACCC___TT
13._MO_20
_AACT_____ACCC___TT
14._MO_20
_AACT_____ACCC___TT
15._MO_20
_AACT_____ACCC___TT
16._MO_20
_AACT_____ACCC___TT
17._MO_20
_AACT_____ACCC___TT
18._MO_20
_AACT_____ACCC___TT
19._MO_20
__CT_____ACCC___TT
20._MO_20
_AACT_____ACCC___TT
21._RUQ_1566
_AA______ACCC__CC_
22._RUQ_1566
CC________GG____
23._RUQ_1566
________AC-__CC-
24._GC-01-121-6-18
CCGGCCAAAGCCCCGGAACGCCTTAACC
25._MO_20_Fld#_171_Plt#_1
__AGACGGCCAC_ACGGGGATCCAA
26._RUQ_1566
__AGACGGCCAC_ACGGGGATCCAA
27._MITC-000675
__AGACGGCCAC_ACGGGGATCCAA
28._MO_20
_AATT_____AACC___CC
29._MO_20
_GGCC_____AACG___CC
30._MO_20_Fld#_74_Plt#_1
__AAACAAACAA_CCCCGGAACCAA
 85868788899091929394    
_Input profile
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
1._GC-08-167-4-10
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
2._GC-01-121-6-18
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
3._GC-01-121-6-18
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
4._GC-01-121-6-18
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
5._GC-01-121-6-18
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
6._GC-01-121-6-18
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
7._GC-08-167-4-10
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
8._GC-08-167-4-10
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
9._GC-01-121-6-18
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
10._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
11._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
12._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
13._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
14._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
15._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
16._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
17._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
18._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
19._MO_20
CTCT_AG_CTGTCT__X_XX_XX_XX_X
20._MO_20
CTTT_AG_CTGTCT__X_XX_XX_XX_X
21._RUQ_1566
_CT__CC_GT___X_XX_XX_XX_X
22._RUQ_1566
CT_________X_XX_XX_XX_X
23._RUQ_1566
___GG---___X_XX_XX_XX_X
24._GC-01-121-6-18
CTCCCCAGCCCCTTTTAAGGX_XX_XX_XX_X
25._MO_20_Fld#_171_Plt#_1
AG_AG__AGACAGATGGX_XX_XX_XX_X
26._RUQ_1566
AG_AG__AGACAGATGGX_XX_XX_XX_X
27._MITC-000675
AG_AG__AGACAGATGGX_XX_XX_XX_X
28._MO_20
TTCC_GG_CCTTCC__X_XX_XX_XX_X
29._MO_20
CTCC_AG_CCTTTT__X_XX_XX_XX_X
30._MO_20_Fld#_74_Plt#_1
AA_AA__AGAAAAATGGX_XX_XX_XX_X

Input profile: MO_20 GC-08-167-4-10

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._MO_20 GC-08-167-4-10

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._MO_20 GC-01-121-6-18

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._MO_20 GC-01-121-6-18

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._MO_20 GC-01-121-6-18

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._MO_20 GC-01-121-6-18

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._MO_20 GC-01-121-6-18

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._MO_20 GC-08-167-4-10

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._MO_20 GC-08-167-4-10

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._MO_20 GC-01-121-6-18

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

10._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

11._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

12._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

13._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

14._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

15._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

16._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

17._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

18._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

20._MO_20

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

21._MO_20 RUQ_1566

92.9 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._MO_20 RUQ_1566

88.5 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

23._MO_20 RUQ_1566

77.3 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._MO_20 GC-01-121-6-18

54.9 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._MO_20 MO_20_Fld#_171_Plt#_1

54.4 %
80 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

26._MO_20 RUQ_1566

53.8 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

27._MO_20 MITC-000675

53.8 %
79 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

28._MO_20

53.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

29._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._MO_20 MO_20_Fld#_74_Plt#_1

36.9 %
80 shared markers

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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240