SNP Profiles of IMC-47   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTACGGAGCTCTCTCTAGCTCTCT
1._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
2._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
3._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
4._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
5._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
6._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
7._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
8._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
9._IMC_47
AAACCTAC____CTCTAG_CT_
10._IMC_47
AAACCTAC____CTCTAG_CT_
11._IMC_47
AAACCTAC____CTCTAG_CT_
12._IMC_47
AAACCTAC____CTCTAG_CT_
13._IMC_47
AAACCTAC____CTCTAG_CT_
14._IMC_47
AAACCTAC____CTCTAG_CT_
15._IMC_47
AAACCTAC____CTCTAG_CT_
16._IMC_47
AAACCTAC____CTCTAG_CT_
17._IMC_47
AAACCTAC____CTCTAG_CT_
18._IMC_47
AAACCTAC____CCCTAG_CT_
19._RUQ_849
ATCCCCAC____CCCTAG_CT_
20._RUQ_849
__CCAC__TT_CC__TTTT_
21._RUQ_849B
___AC__TT_______
22._IMC_47
ATCCCCAC____CCCTAG_TT_
23._IMC_47
AACCCTAA____CTCCGG_CT_
24._GC-08-103-3-2
AAAC_ACGGAG_AGAG_AGAGAGAG
25._MITC-000413
ATCC_ACAGAG_AGGG_AGAAAAAA
 1516171819202122232425262728
_Input profile
ATACAAAGCGCCCGCTAATTGGATATGG
1._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
2._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
3._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
4._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
5._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
6._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
7._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
8._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
9._IMC_47
___AG__CG____ATAT_
10._IMC_47
___AG__CG____ATAT_
11._IMC_47
___AG__CG____ATAT_
12._IMC_47
___AG__CG____ATAT_
13._IMC_47
___AG__CG____ATAT_
14._IMC_47
___AG__CG____ATAT_
15._IMC_47
___AG__CG____ATAT_
16._IMC_47
___AG__CG____ATAT_
17._IMC_47
___AG__CG____ATAT_
18._IMC_47
___AG__CG____AAAT_
19._RUQ_849
___GG__GG____ATAT_
20._RUQ_849
_____CC____GG_ATCC
21._RUQ_849B
___GGCT_________
22._IMC_47
___GG__GG____ATAT_
23._IMC_47
___GG__GG____TTAA_
24._GC-08-103-3-2
ATACAAAGCG_CGAGAAAAGGATATCC
25._MITC-000413
ATAAAGGGCC_GGAGAAAAGGATATGG
 2930313233343536373839404142
_Input profile
CCATTTGTAGCGACAGGGGTGTAACCAG
1._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
2._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
3._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
4._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
5._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
6._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
7._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
8._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
9._IMC_47
CCAT___CG_AGGG__AA__
10._IMC_47
CCAT___CG_AGGG__AA__
11._IMC_47
CCAT___CG_AGGG__AA__
12._IMC_47
CCAT___CG_AGGG__AA__
13._IMC_47
CCAT___CG_AGGG__AA__
14._IMC_47
CCAT___CG_AGGG__AA__
15._IMC_47
CCAT___CG_AGGG__AA__
16._IMC_47
CCAT___CG_AGGG__AA__
17._IMC_47
CCAT___CG_AGGG__AA__
18._IMC_47
CCAT___CC_AAGT__AA__
19._RUQ_849
CCAA___GG_AGGT__AG__
20._RUQ_849
CC___GGCGCCAATT__AGCC_
21._RUQ_849B
CC____GG_AA____CC_
22._IMC_47
CCAA___GG_AATT__AG__
23._IMC_47
CCAT___GG_AAGT__AG__
24._GC-08-103-3-2
GGATAAACAGCGACAGCCACACAAGGAG
25._MITC-000413
GGAAAAACGGCGCCAAAACCAAAGGGGG
 4344454647484950515253545556
_Input profile
CCGGATCCAGAACTACAGAGGGCTCTTT
1._GC-08-103-3-02
CCGGATCCAGAACTACAGAGGGCTCTTT
2._GC-08-103-3-02
CCGGATCCAGAACTACAGAGGGCTCTTT
3._GC-08-103-3-02
CCGGATCCAGAACTACAGAGGGCTCTTT
4._GC-08-103-3-02
CCGGATCCAGAACTACAGAGGGCTCTTT
5._GC-08-103-3-02
CCGGATCCAGAACTACAGAGGGCTCTTT
6._GC-08-103-3-02
CCGGATCCAGAACTACAGAGGGCTCTTT
7._GC-08-103-3-02
CCGGATCCAGAACTACAGAGGGCTCTTT
8._GC-08-103-3-02
CCGGATCCAGAACTACAGAGGGCT_TT
9._IMC_47
___CC_______CTCT_
10._IMC_47
___CC_______CTCT_
11._IMC_47
___CC_______CTCT_
12._IMC_47
___CC_______CTCT_
13._IMC_47
___CC_______CTCT_
14._IMC_47
___CC_______CTCT_
15._IMC_47
___CC_______CTCT_
16._IMC_47
___CC_______CTCT_
17._IMC_47
___CC_______CT__
18._IMC_47
___CT_______CTCT_
19._RUQ_849
___TT_______CTCC_
20._RUQ_849
_GGTT__GG_____CT_TT
21._RUQ_849B
_____GG________
22._IMC_47
___TT_______CTCC_
23._IMC_47
___TT_______CTCC_
24._GC-08-103-3-2
GGCC_GG_AAAG_AGAGCCAGAGAA
25._MITC-000413
GGCC_AA_GGGG_GGAGACAGGGAA
 5758596061626364656667686970
_Input profile
AGCGCTTTACCGAGAAAGGTGTAGCTCC
1._GC-08-103-3-02
AGCGCTTTACCGAGAAAGGTGTAGCTCC
2._GC-08-103-3-02
AGCGCTTTACCGAGAAAGGTGTAGCTCC
3._GC-08-103-3-02
AGCGCTTTACCGAGAAAGGTGTAGCTCC
4._GC-08-103-3-02
AGCGCTTTACCGAGAAAGGTGTAGCTCC
5._GC-08-103-3-02
AGCGCTTTACCGAGAAAGGTGTAGCTCC
6._GC-08-103-3-02
AGCGCTTTACCGAGAAAGGTGTAGCTCC
7._GC-08-103-3-02
AGCGCTTTACCGAGAAAGGTGTAGCTCC
8._GC-08-103-3-02
AGCGCTTTACCGAGAAAGGTGTAGCTCC
9._IMC_47
_CG_TTACCG_AAAGGTGT___
10._IMC_47
_CG_TTACCG_AAAGGTGT___
11._IMC_47
_CG_TTACCG_AAAGGTGT___
12._IMC_47
_CG_TTACCG_AAAGGTGT___
13._IMC_47
_CG_TTACCG_AAAGGTGT___
14._IMC_47
_CG_TTACCG_AAAGGTGT___
15._IMC_47
_CG_TTACCG_AAAGGTGT___
16._IMC_47
_CG_TTACCG_AAAGGTGT___
17._IMC_47
_CG_TTACCG_AAAGGTGT___
18._IMC_47
___TTACGG_CCAGGTGG___
19._RUQ_849
_CG_TTACCG_CCAGGGGG___
20._RUQ_849
-CGCCTTAC_GGCCAGGGGGAG__
21._RUQ_849B
GG______CCAG_GGAG__
22._IMC_47
_CC_TTACCG_CCAGGGGG___
23._IMC_47
___TTACGG_CCAGGTGG___
24._GC-08-103-3-2
AGCGAGAAACCGAGAAAGACACAG__
25._MITC-000413
GGCGGGAAACCGGGCCAGCCCCAG__
 7172737475767778798081828384
_Input profile
AACTACGGCCACAAACCGCTAAACTTCT
1._GC-08-103-3-02
AACTACGGCCACAAACCGCTAAACTTCT
2._GC-08-103-3-02
AACTACGGCCACAAACCGCTAAACTTCT
3._GC-08-103-3-02
AACTACGGCCACAAACCGCTAAACTTCT
4._GC-08-103-3-02
AACTACGGCCACAAACCGCTAAACTTCT
5._GC-08-103-3-02
AACTACGGCCACAAACCGCTAAACTTCT
6._GC-08-103-3-02
AACTACGGCCACAAACCGCTAAACTTCT
7._GC-08-103-3-02
AACTACGGCCACAAACCGCTAAACTTCT
8._GC-08-103-3-02
AACTACGGCCACAAACCGCTAAACTTCT
9._IMC_47
AACT_____ACCG___TTCT
10._IMC_47
AACT_____ACCG___TTCT
11._IMC_47
AACT_____ACCG___TTCT
12._IMC_47
AACT_____ACCG___TTCT
13._IMC_47
AACT_____ACCG___TTCT
14._IMC_47
AACT_____ACCG___TTCT
15._IMC_47
AACT_____ACCG___TTCT
16._IMC_47
AACT_____ACCG___TTCT
17._IMC_47
AACT_____ACCG___TTCT
18._IMC_47
AGCT_____ACCG___TTCT
19._RUQ_849
AACC_____ACCG___CCTT
20._RUQ_849
_______ACCG__ACCC_
21._RUQ_849B
AA______ACCG__AC__
22._IMC_47
AACC_____ACCG___CCTT
23._IMC_47
AACC_____CCGG___CCTT
24._GC-08-103-3-2
_AGACGGCCAC_ACCGAGAAACAAAG
25._MITC-000413
_GGACAGACAC_ACCGGGATACGGAA
 858687888990919293     
_Input profile
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
1._GC-08-103-3-02
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
2._GC-08-103-3-02
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
3._GC-08-103-3-02
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
4._GC-08-103-3-02
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
5._GC-08-103-3-02
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
6._GC-08-103-3-02
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
7._GC-08-103-3-02
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
8._GC-08-103-3-02
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
9._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
10._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
11._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
12._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
13._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
14._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
15._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
16._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
17._IMC_47
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
18._IMC_47
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
19._RUQ_849
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
20._RUQ_849
__AACCCTGT___X_XX_XX_XX_XX_X
21._RUQ_849B
CC__CC_GT___X_XX_XX_XX_XX_X
22._IMC_47
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
23._IMC_47
CC_AA_TTGTCT__X_XX_XX_XX_XX_X
24._GC-08-103-3-2
_AG__AGACAGATGGX_XX_XX_XX_XX_X
25._MITC-000413
_AG__AGAAAGATGGX_XX_XX_XX_XX_X

Input profile: IMC_47 GC-08-103-3-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

1._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

6._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

7._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._IMC_47 GC-08-103-3-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

11._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

12._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

13._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

14._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

15._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

16._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

17._IMC_47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

18._IMC_47

84.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

19._IMC_47 RUQ_849

71.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._IMC_47 RUQ_849

69.5 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._IMC_47 RUQ_849B

69 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._IMC_47

66.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

23._IMC_47

64.1 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

24._IMC_47 GC-08-103-3-2

55.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

25._IMC_47 MITC-000413

41.8 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240