SNP Profiles of IMC-47   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTACGGAGCTCTCTCTAGCTCTCT
1._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
2._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
3._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
4._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
5._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
6._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
7._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
8._GC-08-103-3-02
AAACCTACGGAGCTCTCTCTAGCTCTCT
9._IMC_47
AAACCTAC____CTCTAG_CT_
10._IMC_47
AAACCTAC____CTCTAG_CT_
11._IMC_47
AAACCTAC____CTCTAG_CT_
12._IMC_47
AAACCTAC____CTCTAG_CT_
13._IMC_47
AAACCTAC____CTCTAG_CT_
14._IMC_47
AAACCTAC____CTCTAG_CT_
15._IMC_47
AAACCTAC____CTCTAG_CT_
16._IMC_47
AAACCTAC____CTCTAG_CT_
17._IMC_47
AAACCTAC____CTCTAG_CT_
18._IMC_47
AAACCTAC____CCCTAG_CT_
19._RUQ_849
ATCCCCAC____CCCTAG_CT_
20._RUQ_849
__CCAC__TT_CC__TTTT_
21._RUQ_849B
___AC__TT_______
22._IMC_47
ATCCCCAC____CCCTAG_TT_
23._IMC_47
AACCCTAA____CTCCGG_CT_
24._GC-08-103-3-2
AAAC_ACGGAG_AGAG_AGAGAGAG
25._MITC-000413
ATCC_ACAGAG_AGGG_AGAAAAAA
 1516171819202122232425262728
_Input profile
ATACAAAGCGCCCGCTAATTGGATATGG
1._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
2._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
3._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
4._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
5._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
6._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
7._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
8._GC-08-103-3-02
ATACAAAGCGCCCGCTAATTGGATATGG
9._IMC_47
___AG__CG____ATAT_
10._IMC_47
___AG__CG____ATAT_
11._IMC_47
___AG__CG____ATAT_
12._IMC_47
___AG__CG____ATAT_
13._IMC_47
___AG__CG____ATAT_
14._IMC_47
___AG__CG____ATAT_
15._IMC_47
___AG__CG____ATAT_
16._IMC_47
___AG__CG____ATAT_
17._IMC_47
___AG__CG____ATAT_
18._IMC_47
___AG__CG____AAAT_
19._RUQ_849
___GG__GG____ATAT_
20._RUQ_849
_____CC____GG_ATCC
21._RUQ_849B
___GGCT_________
22._IMC_47
___GG__GG____ATAT_
23._IMC_47
___GG__GG____TTAA_
24._GC-08-103-3-2
ATACAAAGCG_CGAGAAAAGGATATCC
25._MITC-000413
ATAAAGGGCC_GGAGAAAAGGATATGG
 2930313233343536373839404142
_Input profile
CCATTTGTAGCGACAGGGGTGTAACCAG
1._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
2._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
3._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
4._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
5._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
6._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
7._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
8._GC-08-103-3-02
CCATTTGTAGCGACAGGGGTGTAACCAG
9._IMC_47
CCAT___CG_AGGG__AA__
10._IMC_47
CCAT___CG_AGGG__AA__
11._IMC_47
CCAT___CG_AGGG__AA__
12._IMC_47
CCAT___CG_AGGG__AA__
13._IMC_47
CCAT___CG_AGGG__AA__
14._IMC_47
CCAT___CG_AGGG__AA__
15._IMC_47
CCAT___CG_AGGG__AA__
16._IMC_47
CCAT___CG_AGGG__AA__
17._IMC_47
CCAT___CG_AGGG__AA__
18._IMC_47
CCAT___CC_AAGT__AA__
19._RUQ_849
CCAA___GG_AGGT__AG__
20._RUQ_849
CC___GGCGCCAATT__AGCC_
21._RUQ_849B
CC____GG_AA____CC_
22._IMC_47
CCAA___GG_AATT__AG__
23._IMC_47
CCAT___GG_AAGT__AG__
24._GC-08-103-3-2
GGATAAACAGCGACAGCCACACAAGGAG
25._MITC-000413
GGAAAAACGGCGCCAAAACCAAAGGGGG
 4344454647484950515253545556
_Input profile
CCGGATCCAGAAAACTACAGAGGGCTCT
1._GC-08-103-3-02
CCGGATCCAGAAAACTACAGAGGGCTCT
2._GC-08-103-3-02
CCGGATCCAGAAAACTACAGAGGGCTCT
3._GC-08-103-3-02
CCGGATCCAGAAAACTACAGAGGGCTCT
4._GC-08-103-3-02
CCGGATCCAGAAAACTACAGAGGGCTCT
5._GC-08-103-3-02
CCGGATCCAGAAAACTACAGAGGGCTCT
6._GC-08-103-3-02
CCGGATCCAGAAAACTACAGAGGGCTCT
7._GC-08-103-3-02
CCGGATCCAGAA_CTACAGAGGGCTCT
8._GC-08-103-3-02
CCGGATCCAGAAAACTACAGAGGGCT_
9._IMC_47
___CC________CTCT
10._IMC_47
___CC________CTCT
11._IMC_47
___CC________CTCT
12._IMC_47
___CC________CTCT
13._IMC_47
___CC________CTCT
14._IMC_47
___CC________CTCT
15._IMC_47
___CC________CTCT
16._IMC_47
___CC________CTCT
17._IMC_47
___CC________CT_
18._IMC_47
___CT________CTCT
19._RUQ_849
___TT________CTCC
20._RUQ_849
_GGTT__GG______CT_
21._RUQ_849B
_____GG________
22._IMC_47
___TT________CTCC
23._IMC_47
___TT________CTCC
24._GC-08-103-3-2
GGCC_GG_AAAAAG_AGAGCCAGAG
25._MITC-000413
GGCC_AA_GGAAGG_GGAGACAGGG
 5758596061626364656667686970
_Input profile
TTAGCGCTTTACCGAGAAAGGTGTAGCT
1._GC-08-103-3-02
TTAGCGCTTTACCGAGAAAGGTGTAGCT
2._GC-08-103-3-02
TTAGCGCTTTACCGAGAAAGGTGTAGCT
3._GC-08-103-3-02
TTAGCGCTTTACCGAGAAAGGTGTAGCT
4._GC-08-103-3-02
TTAGCGCTTTACCGAGAAAGGTGTAGCT
5._GC-08-103-3-02
TTAGCGCTTTACCGAGAAAGGTGTAGCT
6._GC-08-103-3-02
TTAGCGCTTTACCGAGAAAGGTGTAGCT
7._GC-08-103-3-02
TTAGCGCTTTACCGAGAAAGGTGTAGCT
8._GC-08-103-3-02
TTAGCGCTTTACCGAGAAAGGTGTAGCT
9._IMC_47
__CG_TTACCG_AAAGGTGT__
10._IMC_47
__CG_TTACCG_AAAGGTGT__
11._IMC_47
__CG_TTACCG_AAAGGTGT__
12._IMC_47
__CG_TTACCG_AAAGGTGT__
13._IMC_47
__CG_TTACCG_AAAGGTGT__
14._IMC_47
__CG_TTACCG_AAAGGTGT__
15._IMC_47
__CG_TTACCG_AAAGGTGT__
16._IMC_47
__CG_TTACCG_AAAGGTGT__
17._IMC_47
__CG_TTACCG_AAAGGTGT__
18._IMC_47
____TTACGG_CCAGGTGG__
19._RUQ_849
__CG_TTACCG_CCAGGGGG__
20._RUQ_849
TT-CGCCTTAC_GGCCAGGGGGAG_
21._RUQ_849B
_GG______CCAG_GGAG_
22._IMC_47
__CC_TTACCG_CCAGGGGG__
23._IMC_47
____TTACGG_CCAGGTGG__
24._GC-08-103-3-2
AAAGCGAGAAACCGAGAAAGACACAG_
25._MITC-000413
AAGGCGGGAAACCGGGCCAGCCCCAG_
 7172737475767778798081828384
_Input profile
CCAACTACGGCCACAAACCGCTAAACTT
1._GC-08-103-3-02
CCAACTACGGCCACAAACCGCTAAACTT
2._GC-08-103-3-02
CCAACTACGGCCACAAACCGCTAAACTT
3._GC-08-103-3-02
CCAACTACGGCCACAAACCGCTAAACTT
4._GC-08-103-3-02
CCAACTACGGCCACAAACCGCTAAACTT
5._GC-08-103-3-02
CCAACTACGGCCACAAACCGCTAAACTT
6._GC-08-103-3-02
CCAACTACGGCCACAAACCGCTAAACTT
7._GC-08-103-3-02
CCAACTACGGCCACAAACCGCTAAACTT
8._GC-08-103-3-02
CCAACTACGGCCACAAACCGCTAAACTT
9._IMC_47
_AACT_____ACCG___TT
10._IMC_47
_AACT_____ACCG___TT
11._IMC_47
_AACT_____ACCG___TT
12._IMC_47
_AACT_____ACCG___TT
13._IMC_47
_AACT_____ACCG___TT
14._IMC_47
_AACT_____ACCG___TT
15._IMC_47
_AACT_____ACCG___TT
16._IMC_47
_AACT_____ACCG___TT
17._IMC_47
_AACT_____ACCG___TT
18._IMC_47
_AGCT_____ACCG___TT
19._RUQ_849
_AACC_____ACCG___CC
20._RUQ_849
________ACCG__ACCC
21._RUQ_849B
_AA______ACCG__AC_
22._IMC_47
_AACC_____ACCG___CC
23._IMC_47
_AACC_____CCGG___CC
24._GC-08-103-3-2
__AGACGGCCAC_ACCGAGAAACAA
25._MITC-000413
__GGACAGACAC_ACCGGGATACGG
 85868788899091929394    
_Input profile
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
1._GC-08-103-3-02
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
2._GC-08-103-3-02
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
3._GC-08-103-3-02
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
4._GC-08-103-3-02
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
5._GC-08-103-3-02
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
6._GC-08-103-3-02
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
7._GC-08-103-3-02
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
8._GC-08-103-3-02
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
9._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
10._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
11._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
12._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
13._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
14._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
15._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
16._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
17._IMC_47
CTCT_AG_CTGTCT__X_XX_XX_XX_X
18._IMC_47
CTCT_AG_CTGTTT__X_XX_XX_XX_X
19._RUQ_849
TTCC_AA_CTGTCT__X_XX_XX_XX_X
20._RUQ_849
___AACCCTGT___X_XX_XX_XX_X
21._RUQ_849B
_CC__CC_GT___X_XX_XX_XX_X
22._IMC_47
TTCC_AA_CTGTCT__X_XX_XX_XX_X
23._IMC_47
TTCC_AA_TTGTCT__X_XX_XX_XX_X
24._GC-08-103-3-2
AG_AG__AGACAGATGGX_XX_XX_XX_X
25._MITC-000413
AA_AG__AGAAAGATGGX_XX_XX_XX_X

Input profile: IMC_47 GC-08-103-3-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

1._IMC_47 GC-08-103-3-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._IMC_47 GC-08-103-3-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._IMC_47 GC-08-103-3-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

4._IMC_47 GC-08-103-3-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

5._IMC_47 GC-08-103-3-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._IMC_47 GC-08-103-3-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._IMC_47 GC-08-103-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

11._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

12._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

13._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

14._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

15._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

16._IMC_47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

17._IMC_47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

18._IMC_47

84.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

19._IMC_47 RUQ_849

71.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._IMC_47 RUQ_849

69.5 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._IMC_47 RUQ_849B

69 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._IMC_47

66.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

23._IMC_47

64.1 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

24._IMC_47 GC-08-103-3-2

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

25._IMC_47 MITC-000413

42.5 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240