SNP Profiles of JA-62 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	AA	AA	TT	TT	CC	CT	AG	TT	CT	CT	AT
1._GC-08-091-2-14	TT	CC	CC	AA	AA	TT	TT	CC	CT	AG	TT	CT	CT	AT
2._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
3._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
4._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
5._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
6._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
7._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
8._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
9._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
10._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
11._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
12._JA_6_/2_[POU]	TT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
13._JA_6_/2_[POU]	_	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
14._JA_6_/2_[POU]	AT	CC	CC	_	_	_	_	CC	CT	AG	_	CT	_	_
15._JA_6_/2_[POU]	AT	CT	CC	_	_	_	_	CC	CT	GG	_	CT	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	AA	AA	CG	CC	GG	CT	AA	CT	GG	AT	AT	CC	GG
1._GC-08-091-2-14	AC	AA	AA	CG	CC	GG	CT	AA	CT	GG	AT	AT	CC	GG
2._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
3._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
4._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
5._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
6._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
7._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
8._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
9._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
10._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
11._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
12._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
13._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
14._JA_6_/2_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	GG
15._JA_6_/2_[POU]	_	_	AG	_	_	GG	_	_	_	_	AT	AT	_	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	TT	TT	AG	CC	CC	AA	GT	GG	TT	GG	CT	GG	CG
1._GC-08-091-2-14	AT	TT	TT	AG	CC	CC	AA	GT	GG	TT	GG	CT	GG	CG
2._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
3._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
4._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
5._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
6._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
7._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
8._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
9._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
10._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
11._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
12._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
13._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
14._JA_6_/2_[POU]	AT	_	_	_	CC	_	AA	GT	_	_	GG	_	_	_
15._JA_6_/2_[POU]	AT	_	_	_	CG	_	AG	GT	_	_	AG	_	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CT	AA	GG	AA	CC	AC	GG	AA	TT	CT	CC	TT
1._GC-08-091-2-14	GG	TT	CT	AA	GG	AA	CC	AC	GG	AA	TT	CT	CC	TT
2._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
3._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
4._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
5._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
6._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
7._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
8._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
9._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
10._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
11._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
12._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	_	CC	_
13._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
14._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CC	_
15._JA_6_/2_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CT	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AG	CC	CC	CT	AC	CG	AG	CC	AA	GG	GG	AG	TT	CC
1._GC-08-091-2-14	AG	CC	CC	CT	AC	CG	AG	CC	AA	GG	GG	AG	TT	CC
2._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
3._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
4._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
5._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
6._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
7._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
8._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
9._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
10._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
11._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
12._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
13._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	_	_	_	_
14._JA_6_/2_[POU]	_	CC	_	CT	AC	CG	_	CC	AA	GG	GG	_	_	_
15._JA_6_/2_[POU]	_	CG	_	CT	CC	CG	_	CC	AA	GT	GG	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	CT	AA	AA	CC	AC	AG	AA	CC	CC	AA	CC	CT	TT
1._GC-08-091-2-14	AA	CT	AA	AA	CC	AC	AG	AA	CC	CC	AA	CC	CT	TT
2._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
3._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
4._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
5._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
6._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
7._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
8._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
9._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
10._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
11._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
12._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
13._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
14._JA_6_/2_[POU]	AG	CT	_	_	_	_	_	AA	CC	_	_	_	CT	TT
15._JA_6_/2_[POU]	AA	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT

	85	86	87	88	89	90	91	92	93
_Input profile	CC	CT	AG	CC	CC	GT	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-08-091-2-14	CC	CT	AG	CC	CC	GT	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
2._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
3._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
4._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
5._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
6._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
7._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
8._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
9._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
10._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
11._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
12._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
13._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
14._JA_6_/2_[POU]	CC	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
15._JA_6_/2_[POU]	CT	_	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X

Input profile: JA_6_/2_[POU] GC-08-091-2-14

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

1._JA_6_/2_[POU] GC-08-091-2-14

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

2._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 3 > FP

Dapeng Zhang, 2016

3._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 2 > FP

Dapeng Zhang, 2016

4._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 1 > FP

Dapeng Zhang, 2016

5._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 13

Dapeng Zhang, 2016

6._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 11

Dapeng Zhang, 2016

7._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 9

Dapeng Zhang, 2016

8._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 7

Dapeng Zhang, 2016

9._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 5

Dapeng Zhang, 2016

10._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

11._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

12._JA_6_/2_[POU]

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 10

Dapeng Zhang, 2016

13._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 15

Dapeng Zhang, 2016

14._JA_6_/2_[POU]

97.4 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 364

Dapeng Zhang, 2016

15._JA_6_/2_[POU]

80.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 12

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240

SNP Profiles of JA-62 View Data

Show/Hide Profiles

Input profile: JA_6_/2_[POU] GC-08-091-2-14

1._JA_6_/2_[POU] GC-08-091-2-14

identical 93 shared markers

2._JA_6_/2_[POU]

identical 39 shared markers

3._JA_6_/2_[POU]

identical 39 shared markers

4._JA_6_/2_[POU]

identical 39 shared markers

5._JA_6_/2_[POU]

identical 39 shared markers

6._JA_6_/2_[POU]

identical 39 shared markers

7._JA_6_/2_[POU]

identical 39 shared markers

8._JA_6_/2_[POU]

identical 39 shared markers

9._JA_6_/2_[POU]

identical 39 shared markers

10._JA_6_/2_[POU]

identical 39 shared markers

11._JA_6_/2_[POU]

identical 39 shared markers

12._JA_6_/2_[POU]

identical 38 shared markers

13._JA_6_/2_[POU]

identical 37 shared markers

14._JA_6_/2_[POU]

97.4 % 39 shared markers

15._JA_6_/2_[POU]

80.8 % 39 shared markers

identical
93 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
38 shared markers

identical
37 shared markers

97.4 %
39 shared markers

80.8 %
39 shared markers