SNP Profiles of "JA 6 /2 [POU]" View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-08-091-2-14	CG	GG	AT	AA	CC	TT	CC	CT	CC	GT	CT	TT	GG	AC
2. _GC-08-091-2-14	CG	GG	AT	AA	CC	TT	CC	CT	CC	GT	CT	TT	GG	AC
3. _8214_4	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
4. _8214_4	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
5. _8214_5	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
6. _8214_7	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
7. _8214_9	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
8. _8214_10	CG	___	AT	___	___	___	___	___	CC	GT	___	___	___	AC
9. _8214_11	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
10. _8214_13	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
11. _8214_15	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
12. _8214_1_>_FP	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
13. _8214_2_>_FP	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
14. _8214_3_>_FP	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC
15. _8214_12	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	CC
16. _Marper_C_364	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-08-091-2-14	CC	AA	GG	CC	AT	GG	AG	AT	CT	AA	AG	AA	CC	AG
2. _GC-08-091-2-14	CC	AA	GG	CC	AT	GG	AG	AT	CT	AA	AG	AA	CC	AG
3. _8214_4	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
4. _8214_4	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
5. _8214_5	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
6. _8214_7	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
7. _8214_9	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
8. _8214_10	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
9. _8214_11	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
10. _8214_13	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
11. _8214_15	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
12. _8214_1_>_FP	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
13. _8214_2_>_FP	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
14. _8214_3_>_FP	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
15. _8214_12	CG	AA	___	CC	___	___	___	AT	___	___	GG	___	___	AG
16. _Marper_C_364	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-08-091-2-14	AC	AA	CC	AA	GG	GG	CC	CC	CT	AA	CT	AA	AA	AA
2. _GC-08-091-2-14	AC	AA	CC	AA	GG	GG	CC	CC	CT	AA	CT	AA	AA	AA
3. _8214_4	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
4. _8214_4	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
5. _8214_5	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
6. _8214_7	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
7. _8214_9	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
8. _8214_10	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
9. _8214_11	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
10. _8214_13	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
11. _8214_15	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
12. _8214_1_>_FP	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
13. _8214_2_>_FP	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
14. _8214_3_>_FP	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___	___
15. _8214_12	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___	___
16. _Marper_C_364	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AG	___	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-08-091-2-14	TT	TT	GG	AG	TT	TT	TT	CC	CG	AA	GG	CC	CT	CG
2. _GC-08-091-2-14	TT	TT	GG	AG	TT	TT	TT	CC	CG	AA	GG	CC	CT	CG
3. _8214_4	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
4. _8214_4	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
5. _8214_5	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
6. _8214_7	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
7. _8214_9	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
8. _8214_10	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
9. _8214_11	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
10. _8214_13	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
11. _8214_15	___	___	___	___	___	___	___	___	___	___	GG	___	CT	___
12. _8214_1_>_FP	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
13. _8214_2_>_FP	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
14. _8214_3_>_FP	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
15. _8214_12	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
16. _Marper_C_364	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-08-091-2-14	AG	CT	GG	CC	AT	TT	AA	CC	TT	CC	CC	AA	GG	TT
2. _GC-08-091-2-14	AG	CT	GG	CC	AT	TT	AA	CC	TT	CC	CC	AA	GG	TT
3. _8214_4	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
4. _8214_4	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
5. _8214_5	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
6. _8214_7	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
7. _8214_9	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
8. _8214_10	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
9. _8214_11	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
10. _8214_13	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
11. _8214_15	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	___
12. _8214_1_>_FP	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
13. _8214_2_>_FP	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
14. _8214_3_>_FP	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	TT
15. _8214_12	___	CT	GG	___	AT	TT	AG	___	___	___	CC	AG	___	AT
16. _Marper_C_364	___	CT	GG	___	AT	TT	AA	___	___	___	CC	AA	___	AT

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-08-091-2-14	TT	AG	TT	CC	CT	CT	CT	TT	AC	GT	CT	___	GG	CT
2. _GC-08-091-2-14	TT	AG	TT	CC	CT	CT	CT	TT	AC	GT	CT	___	GG	CT
3. _8214_4	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
4. _8214_4	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
5. _8214_5	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
6. _8214_7	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
7. _8214_9	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
8. _8214_10	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
9. _8214_11	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
10. _8214_13	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
11. _8214_15	___	___	___	CC	___	___	CT	___	___	GT	CT	AC	___	CT
12. _8214_1_>_FP	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
13. _8214_2_>_FP	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
14. _8214_3_>_FP	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___	CT
15. _8214_12	___	___	___	CT	___	___	CT	___	___	GT	CT	AA	___	CT
16. _Marper_C_364	___	___	___	CC	___	___	CT	___	___	GT	CT	CC	___	CT

	85	86	87	88	89	90	91	92	93	94
1. _GC-08-091-2-14	CC	CT	CC	GG	CC	CC	AG	AA	AA	AC	X_X	X_X	X_X	X_X
2. _GC-08-091-2-14	CC	CT	CC	GG	CC	CC	AG	AA	AA	AC	X_X	X_X	X_X	X_X
3. _8214_4	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
4. _8214_4	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
5. _8214_5	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
6. _8214_7	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
7. _8214_9	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
8. _8214_10	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
9. _8214_11	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
10. _8214_13	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
11. _8214_15	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
12. _8214_1_>_FP	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
13. _8214_2_>_FP	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
14. _8214_3_>_FP	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
15. _8214_12	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
16. _Marper_C_364	___	CT	CC	GG	CC	___	___	___	___	___	X_X	X_X	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._JA_6_/2_[POU] GC-08-091-2-14

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Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

2._JA_6_/2_[POU] GC-08-091-2-14

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Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

3._JA_6_/2_[POU]

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Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

4._JA_6_/2_[POU]

Location: 8214 4

Population Assignment:

5._JA_6_/2_[POU]

Location: 8214 5

6._JA_6_/2_[POU]

Location: 8214 7

7._JA_6_/2_[POU]

Location: 8214 9

8._JA_6_/2_[POU]

Location: 8214 10

9._JA_6_/2_[POU]

Location: 8214 11

10._JA_6_/2_[POU]

Location: 8214 13

11._JA_6_/2_[POU]

Location: 8214 15

12._JA_6_/2_[POU]

Location: 8214 1 > FP

Dapeng Zhang, 2016

13._JA_6_/2_[POU]

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Location: 8214 2 > FP

Dapeng Zhang, 2016

14._JA_6_/2_[POU]

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Location: 8214 3 > FP

Dapeng Zhang, 2016

15._JA_6_/2_[POU]

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Location: 8214 12

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

16._JA_6_/2_[POU]

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Location: Marper C 364

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP521	30	TcSNP529
31	TcSNP534	32	TcSNP547	33	TcSNP560	34	TcSNP561	35	TcSNP577
36	TcSNP591	37	TcSNP602	38	TcSNP606	39	TcSNP619	40	TcSNP645
41	TcSNP653	42	TcSNP689	43	TcSNP701	44	TcSNP702	45	TcSNP723
46	TcSNP731	47	TcSNP751	48	TcSNP776	49	TcSNP799	50	TcSNP823
51	TcSNP836	52	TcSNP860	53	TcSNP872	54	TcSNP878	55	TcSNP891
56	TcSNP894	57	TcSNP899	58	TcSNP917	59	TcSNP929	60	TcSNP944
61	TcSNP953	62	TcSNP994	63	TcSNP998	64	TcSNP999	65	TcSNP1034
66	TcSNP1041	67	TcSNP1060	68	TcSNP1062	69	TcSNP1063	70	TcSNP1075
71	TcSNP1096	72	TcSNP1111	73	TcSNP1126	74	TcSNP1144	75	TcSNP1149
76	TcSNP1156	77	TcSNP1165	78	TcSNP1175	79	TcSNP1242	80	TcSNP1253
81	TcSNP1270	82	TcSNP1350	83	TcSNP1383	84	TcSNP1414	85	TcSNP1439
86	TcSNP1442	87	TcSNP1458	88	TcSNP1484	89	TcSNP1520	90	Tcm001s00947643
91	Tcm002s20575712	92	Tcm003s01336581	93	Tcm003s07402719	94	Tcm006s26664133