SNP Profiles of POUND-18   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTACGGAGCCCCCCCCGGTTCTTT
1._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
2._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
3._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
4._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
5._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
6._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
7._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
8._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGG_CTTT
9._POUND_18
AACCCTAC____CCCCGG_CT_
10._POUND_18
AACCCTAC____CCCCGG_CT_
11._POUND_18
AACCCTAC____CCCCGG_CT_
12._POUND_18
AACCCTAC____CCCCGG_CT_
13._POUND_18
AACCCTAC____CCCCGG_CT_
14._POUND_18
AACCCTAC____CCCCGG_CT_
15._POUND_18
AACCCTAC____CCCCGG_CT_
16._POUND_18
AACCCTAC____CCCCGG_CT_
17._POUND_18
AACCCTAC____CCCCGG_CT_
18._POUND_18
AACCCTAC____CCCCGG_CT_
19._RUQ_874
AACCCTAC____CCCCAG_CT_
20._RUQ_874
__CTAC__TT_CC__TTTT_
21._RUQ_874
___AC__TT_______
22._GC-08-64-1-86
AACC_ACGGAG_GGGG_GGAAAGAA
23._RUQ_874
AACC_ACGGAG_GGGG_GGAAAGAA
 1516171819202122232425262728
_Input profile
AAGGCGCCGGCCAATTGGTTAACCCCAA
1._GC-08-064-1-86
AAGGCGCCGGCCAATTGGTTAACCCCAA
2._GC-08-064-1-86
AAGGCGCCGGCCAATTGGTTAACCCCAA
3._GC-08-064-1-86
AAGGCGCCGGCCAATTGGTTAACCCCAA
4._GC-08-064-1-86
AAGGCGCCGGCCAATTGGTTAACCCCAA
5._GC-08-064-1-86
AAGGCGCCGGCCAATTGGTTAACCCCAA
6._GC-08-064-1-86
AAGGCGCCGGCCAATTGGTTAACCCCAA
7._GC-08-064-1-86
AAGGCGCCGGCCAATTGGTTAACCCCAA
8._GC-08-064-1-86
AAGGCGCCGGCCAATTGGTTAACCCCAA
9._POUND_18
_GG__GG____TTAA_CCAA
10._POUND_18
_GG__GG____TTAA_CCAA
11._POUND_18
_GG__GG____TTAA_CCAA
12._POUND_18
_GG__GG____TTAA_CCAA
13._POUND_18
_GG__GG____TTAA_CCAA
14._POUND_18
_GG__GG____TTAA_CCAA
15._POUND_18
_GG__GG____TTAA_CCAA
16._POUND_18
_GG__GG____TTAA_CCAA
17._POUND_18
_GG__GG____TTAA_CCAA
18._POUND_18
_GG__GG____TTAA_CCAA
19._RUQ_874
_GG__GG____TTAA_CCAA
20._RUQ_874
___CC____GG_AACCCC_
21._RUQ_874
_GGCT_________CC_
22._GC-08-64-1-86
TTGGCG_GGGGAAAAGGTTAAGGGGAA
23._RUQ_874
TTGGCG_GGGGAAAAGGTTAAGGGGAA
 2930313233343536373839404142
_Input profile
TTGGGGGGCCAAGTGGTTAACCGGCCGG
1._GC-08-064-1-86
TTGGGGGGCCAAGTGGTTAACCGGCCGG
2._GC-08-064-1-86
TTGGGGGGCCAAGTGGTTAACCGGCCGG
3._GC-08-064-1-86
TTGGGGGGCCAAGTGGTTAACCGGCCGG
4._GC-08-064-1-86
TTGGGGGGCCAAGTGGTTAACCGGCCGG
5._GC-08-064-1-86
TTGGGGGGCCAAGTGGTTAACCGGCCGG
6._GC-08-064-1-86
TTGGGGGGCCAAGTGGTTAACCGGCCGG
7._GC-08-064-1-86
TTGGGGGGCCAAGTGGTTAACCGGCCGG
8._GC-08-064-1-86
TTGGGGGGCCAAGTGGTTAACCGGCCGG
9._POUND_18
___GG_AAGT__AA____
10._POUND_18
___GG_AAGT__AA____
11._POUND_18
___GG_AAGT__AA____
12._POUND_18
___GG_AAGT__AA____
13._POUND_18
___GG_AAGT__AA____
14._POUND_18
___GG_AAGT__AA____
15._POUND_18
___GG_AAGT__AA____
16._POUND_18
___GG_AAGT__AA____
17._POUND_18
___GG_AAGT__AA____
18._POUND_18
___GG_AAGT__AA____
19._RUQ_874
___GG_AAGT__AG____
20._RUQ_874
__GGGGCCAAGT__AACC__GG
21._RUQ_874
___GG_AA____CC___
22._GC-08-64-1-86
AACCGGGGCCAAACCCAAAAGGGGGGCC
23._RUQ_874
AACCGGGGCCAAACCCAAAAGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAGAGAACCCCGGGGGTTTCTCCTT
1._GC-08-064-1-86
TTTTAGAGAACCCCGGGGGTTTCTCCTT
2._GC-08-064-1-86
TTTTAGAGAACCCCGGGGGTTTCTCCTT
3._GC-08-064-1-86
TTTTAGAGAACCCCGGGGGTTTCTCCTT
4._GC-08-064-1-86
TTTTAGAGAACCCCGGGGGTTTCTCCTT
5._GC-08-064-1-86
TTTTAGAGAACCCCGGGGGTTTCTCCTT
6._GC-08-064-1-86
TTTTAGAGAACCCCGGGGGTTTCTCCTT
7._GC-08-064-1-86
TTTTAGAGAACCCCGGGGGTTTCTCCTT
8._GC-08-064-1-86
TTTTAGAGAACCCCGGGGGTTTCTCCTT
9._POUND_18
_TT_________CTCC_
10._POUND_18
_TT_________CTCC_
11._POUND_18
_TT_________CTCC_
12._POUND_18
_TT_________CTCC_
13._POUND_18
_TT_________CTCC_
14._POUND_18
_TT_________CTCC_
15._POUND_18
_TT_________CTCC_
16._POUND_18
_TT_________CTCC_
17._POUND_18
_TT_________CTCC_
18._POUND_18
_TT_________CTCC_
19._RUQ_874
_TT_________CTCC_
20._RUQ_874
TT__AG______TTCT_TT
21._RUQ_874
___AG__________
22._GC-08-64-1-86
_AA_AGAAGG_GGGGACAAAGGGAA
23._RUQ_874
_AA_AGAAGG_GGGGACAAAGGGAA
 5758596061626364656667686970
_Input profile
GGCGCCTTCCGGGGACAAGTGGGGTTCG
1._GC-08-064-1-86
GGCGCCTTCCGGGGACAAGTGGGGTTCG
2._GC-08-064-1-86
GGCGCCTTCCGGGGACAAGTGGGGTTCG
3._GC-08-064-1-86
GGCGCCTTCCGGGGACAAGTGGGGTTCG
4._GC-08-064-1-86
GGCGCCTTCCGGGGACAAGTGGGGTTCG
5._GC-08-064-1-86
GGCGCCTTCCGGGGACAAGTGGGGTTCG
6._GC-08-064-1-86
GGCGCCTTCCGGGGACAAGTGGGGTTCG
7._GC-08-064-1-86
GGCGCCTTCCGGGGACAAGTGGGGTTCG
8._GC-08-064-1-86
GGCGCCTTCCGGGGACAAGTGGGGTTCG
9._POUND_18
_CG_TTCCGG_ACAAGTGG___
10._POUND_18
_CG_TTCCGG_ACAAGTGG___
11._POUND_18
_CG_TTCCGG_ACAAGTGG___
12._POUND_18
_CG_TTCCGG_ACAAGTGG___
13._POUND_18
_CG_TTCCGG_ACAAGTGG___
14._POUND_18
_CG_TTCCGG_ACAAGTGG___
15._POUND_18
_CG_TTCCGG_ACAAGTGG___
16._POUND_18
_CG_TTCCGG_ACAAGTGG___
17._POUND_18
_CG_TTCCGG_ACAAGTGG___
18._POUND_18
___TTCCGG_ACAAGTGG___
19._RUQ_874
_CG_TTCCGG_ACAAGTGG___
20._RUQ_874
-CGCCTTCC_GGACAAGTGGGG__
21._RUQ_874
GG______ACAA_GGGG__
22._GC-08-64-1-86
GGCGGGAACCGGGGACAAACCCGG__
23._RUQ_874
GGCGGGAACCGGGGACAAACCCGG__
 7172737475767778798081828384
_Input profile
AACCAAAACCCCAGACCGCCAAACCCTT
1._GC-08-064-1-86
AACCAAAACCCCAGACCGCCAAACCCTT
2._GC-08-064-1-86
AACCAAAACCCCAGACCGCCAAACCCTT
3._GC-08-064-1-86
AACCAAAACCCCAGACCGCCAAACCCTT
4._GC-08-064-1-86
AACCAAAACCCCAGACCGCCAAACCCTT
5._GC-08-064-1-86
AACCAAAACCCCAGACCGCCAAACCCTT
6._GC-08-064-1-86
AACCAAAACCCCAGACCGCCAAACCCTT
7._GC-08-064-1-86
AACCAAAACCCCAGACCGCCAAACCCTT
8._GC-08-064-1-86
AACCAAAACCCCAGACCGCCAAACCCTT
9._POUND_18
AACC_____ACCG___CCTT
10._POUND_18
AACC_____ACCG___CCTT
11._POUND_18
AACC_____ACCG___CCTT
12._POUND_18
AACC_____ACCG___CCTT
13._POUND_18
AACC_____ACCG___CCTT
14._POUND_18
AACC_____ACCG___CCTT
15._POUND_18
AACC_____ACCG___CCTT
16._POUND_18
AACC_____ACCG___CCTT
17._POUND_18
AACC_____ACCG___CCTT
18._POUND_18
AACC_____ACCG___CCTT
19._RUQ_874
AACC_____ACCG___CCTT
20._RUQ_874
_______ACCG__ACCC_
21._RUQ_874
AA______ACCG__AC__
22._GC-08-64-1-86
_GGAAAACCCC_ACCGGGAAACGGAA
23._RUQ_874
_GGAAAACCCC_ACCGGGAAACGGAA
 858687888990919293     
_Input profile
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
1._GC-08-064-1-86
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
2._GC-08-064-1-86
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
3._GC-08-064-1-86
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
4._GC-08-064-1-86
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
5._GC-08-064-1-86
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
6._GC-08-064-1-86
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
7._GC-08-064-1-86
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
8._GC-08-064-1-86
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
9._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
10._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
11._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
12._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
13._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
14._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
15._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
16._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
17._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
18._POUND_18
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
19._RUQ_874
CC_AA_CTGTCT__X_XX_XX_XX_XX_X
20._RUQ_874
__AACCCTGT___X_XX_XX_XX_XX_X
21._RUQ_874
CC__CC_GT___X_XX_XX_XX_XX_X
22._GC-08-64-1-86
_AG__AGACAGAAGGX_XX_XX_XX_XX_X
23._RUQ_874
_AG__AGACAGAAGGX_XX_XX_XX_XX_X

Input profile: POUND_18 GC-08-064-1-86

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._POUND_18 GC-08-064-1-86

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 4
 Dapeng Zhang, 2016

10._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 2 > FP
 Dapeng Zhang, 2016

11._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 12
 Dapeng Zhang, 2016

12._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 11
 Dapeng Zhang, 2016

13._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 9
 Dapeng Zhang, 2016

14._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 7
 Dapeng Zhang, 2016

15._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 6
 Dapeng Zhang, 2016

16._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 3
 Dapeng Zhang, 2016

17._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._POUND_18

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F447 T2
 Dapeng Zhang, 2016

19._POUND_18 RUQ_874

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._POUND_18 RUQ_874

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._POUND_18 RUQ_874

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._POUND_18 GC-08-64-1-86

51.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 86, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

23._POUND_18 RUQ_874

51.9 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240