SNP Profiles of POUND-18   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTACGGAGCCCCCCCCGGTTCTTT
1._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
2._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
3._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
4._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
5._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
6._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
7._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGG_CTTT
8._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
9._POUND_18
AACCCTAC____CCCCGG_CT_
10._POUND_18
AACCCTAC____CCCCGG_CT_
11._POUND_18
AACCCTAC____CCCCGG_CT_
12._POUND_18
AACCCTAC____CCCCGG_CT_
13._POUND_18
AACCCTAC____CCCCGG_CT_
14._POUND_18
AACCCTAC____CCCCGG_CT_
15._POUND_18
AACCCTAC____CCCCGG_CT_
16._POUND_18
AACCCTAC____CCCCGG_CT_
17._POUND_18
AACCCTAC____CCCCGG_CT_
18._POUND_18
AACCCTAC____CCCCGG_CT_
19._RUQ_874
AACCCTAC____CCCCAG_CT_
20._RUQ_874
__CTAC__TT_CC__TTTT_
21._RUQ_874
___AC__TT_______
22._GC-08-64-1-86
AACC_ACGGAG_GGGG_GGAAAGAA
23._RUQ_874
AACC_ACGGAG_GGGG_GGAAAGAA
 1516171819202122232425262728
_Input profile
AAAAGGCGCCGGCCAATTGGTTAACCCC
1._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
2._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
3._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
4._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
5._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
6._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
7._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
8._GC-08-064-1-86
AA_GGCGCCGGCCAATTGGTTAACCCC
9._POUND_18
__GG__GG____TTAA_CC
10._POUND_18
__GG__GG____TTAA_CC
11._POUND_18
__GG__GG____TTAA_CC
12._POUND_18
__GG__GG____TTAA_CC
13._POUND_18
__GG__GG____TTAA_CC
14._POUND_18
__GG__GG____TTAA_CC
15._POUND_18
__GG__GG____TTAA_CC
16._POUND_18
__GG__GG____TTAA_CC
17._POUND_18
__GG__GG____TTAA_CC
18._POUND_18
__GG__GG____TTAA_CC
19._RUQ_874
__GG__GG____TTAA_CC
20._RUQ_874
____CC____GG_AACCCC
21._RUQ_874
__GGCT_________CC
22._GC-08-64-1-86
TTAAGGCG_GGGGAAAAGGTTAAGGGG
23._RUQ_874
TTAAGGCG_GGGGAAAAGGTTAAGGGG
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAAGTGGTTAACCGGCC
1._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
2._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
3._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
4._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
5._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
6._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
7._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
8._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
9._POUND_18
AA___GG_AAGT__AA___
10._POUND_18
AA___GG_AAGT__AA___
11._POUND_18
AA___GG_AAGT__AA___
12._POUND_18
AA___GG_AAGT__AA___
13._POUND_18
AA___GG_AAGT__AA___
14._POUND_18
AA___GG_AAGT__AA___
15._POUND_18
AA___GG_AAGT__AA___
16._POUND_18
AA___GG_AAGT__AA___
17._POUND_18
AA___GG_AAGT__AA___
18._POUND_18
AA___GG_AAGT__AA___
19._RUQ_874
AA___GG_AAGT__AG___
20._RUQ_874
___GGGGCCAAGT__AACC__
21._RUQ_874
____GG_AA____CC__
22._GC-08-64-1-86
AAAACCGGGGCCAAACCCAAAAGGGGGG
23._RUQ_874
AAAACCGGGGCCAAACCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCCCGGGGGTTTCTCC
1._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
2._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
3._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
4._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
5._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
6._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
7._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
8._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
9._POUND_18
__TT_________CTCC
10._POUND_18
__TT_________CTCC
11._POUND_18
__TT_________CTCC
12._POUND_18
__TT_________CTCC
13._POUND_18
__TT_________CTCC
14._POUND_18
__TT_________CTCC
15._POUND_18
__TT_________CTCC
16._POUND_18
__TT_________CTCC
17._POUND_18
__TT_________CTCC
18._POUND_18
__TT_________CTCC
19._RUQ_874
__TT_________CTCC
20._RUQ_874
GGTT__AG______TTCT_
21._RUQ_874
____AG_________
22._GC-08-64-1-86
CC_AA_AGAAGG_GGGGACAAAGGG
23._RUQ_874
CC_AA_AGAAGG_GGGGACAAAGGG
 5758596061626364656667686970
_Input profile
TTGGCGCCTTCCGGGGACAAGTGGGGTT
1._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
2._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
3._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
4._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
5._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
6._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
7._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
8._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
9._POUND_18
__CG_TTCCGG_ACAAGTGG__
10._POUND_18
__CG_TTCCGG_ACAAGTGG__
11._POUND_18
__CG_TTCCGG_ACAAGTGG__
12._POUND_18
__CG_TTCCGG_ACAAGTGG__
13._POUND_18
__CG_TTCCGG_ACAAGTGG__
14._POUND_18
__CG_TTCCGG_ACAAGTGG__
15._POUND_18
__CG_TTCCGG_ACAAGTGG__
16._POUND_18
__CG_TTCCGG_ACAAGTGG__
17._POUND_18
__CG_TTCCGG_ACAAGTGG__
18._POUND_18
____TTCCGG_ACAAGTGG__
19._RUQ_874
__CG_TTCCGG_ACAAGTGG__
20._RUQ_874
TT-CGCCTTCC_GGACAAGTGGGG_
21._RUQ_874
_GG______ACAA_GGGG_
22._GC-08-64-1-86
AAGGCGGGAACCGGGGACAAACCCGG_
23._RUQ_874
AAGGCGGGAACCGGGGACAAACCCGG_
 7172737475767778798081828384
_Input profile
CGAACCAAAACCCCAGACCGCCAAACCC
1._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
2._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
3._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
4._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
5._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
6._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
7._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
8._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
9._POUND_18
_AACC_____ACCG___CC
10._POUND_18
_AACC_____ACCG___CC
11._POUND_18
_AACC_____ACCG___CC
12._POUND_18
_AACC_____ACCG___CC
13._POUND_18
_AACC_____ACCG___CC
14._POUND_18
_AACC_____ACCG___CC
15._POUND_18
_AACC_____ACCG___CC
16._POUND_18
_AACC_____ACCG___CC
17._POUND_18
_AACC_____ACCG___CC
18._POUND_18
_AACC_____ACCG___CC
19._RUQ_874
_AACC_____ACCG___CC
20._RUQ_874
________ACCG__ACCC
21._RUQ_874
_AA______ACCG__AC_
22._GC-08-64-1-86
__GGAAAACCCC_ACCGGGAAACGG
23._RUQ_874
__GGAAAACCCC_ACCGGGAAACGG
 85868788899091929394    
_Input profile
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
1._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
2._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
3._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
4._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
5._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
6._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
7._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
8._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
9._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
10._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
11._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
12._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
13._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
14._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
15._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
16._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
17._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
18._POUND_18
TTCC_AA_CTGTCT__X_XX_XX_XX_X
19._RUQ_874
TTCC_AA_CTGTCT__X_XX_XX_XX_X
20._RUQ_874
___AACCCTGT___X_XX_XX_XX_X
21._RUQ_874
_CC__CC_GT___X_XX_XX_XX_X
22._GC-08-64-1-86
AA_AG__AGACAGAAGGX_XX_XX_XX_X
23._RUQ_874
AA_AG__AGACAGAAGGX_XX_XX_XX_X

Input profile: POUND_18 GC-08-064-1-86

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 4
 Dapeng Zhang, 2016

10._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 2 > FP
 Dapeng Zhang, 2016

11._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 12
 Dapeng Zhang, 2016

12._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 11
 Dapeng Zhang, 2016

13._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 9
 Dapeng Zhang, 2016

14._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 7
 Dapeng Zhang, 2016

15._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 6
 Dapeng Zhang, 2016

16._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 3
 Dapeng Zhang, 2016

17._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._POUND_18

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F447 T2
 Dapeng Zhang, 2016

19._POUND_18 RUQ_874

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._POUND_18 RUQ_874

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._POUND_18 RUQ_874

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._POUND_18 GC-08-64-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 86, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

23._POUND_18 RUQ_874

52.5 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240