SNP Profiles of ICS 8   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTCCGGGGCCCCCTTTGGTTCCCC
1._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCCC
2._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCCC
3._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCCC
4._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCCC
5._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTT__CC
6._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCCC
7._ICS_8___
AAAATTCCGGGGCCCC__TTGGTTCCCC
8._ICS_8___
AAAATTCC________CTTTGG__CC__
9._ICS_8___
AAAATTCC________CTTTGG__CC__
10._ICS_8___
AAAATTCC________CTTTGG__CC__
11._ICS_8___
AAAATTCC________CTTTGG__CC__
12._ICS_8___
AAAATTCC________CTTTGG__CC__
13._ICS_8___
AAAATTCC________CTTTGG__CC__
14._ICS_8___
AAAATTCC________CTTTGG______
15._ICS_8___
AAAATTCC__________TTGG__CC__
16._ICS_8___
AAAATTCC________CTTTAG__CC__
17._ICS_8___
AAAA__CCGGGG__GGAG__GGAAGGGG
18._ICS_8___
AAAC__ACGGAG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGTTAATTGGTTAACC
1._ICS_8___
ATCCAAAAGGCGGGTTAATTGGTTAACC
2._ICS_8___
ATCCAAAAGGCGGGTTAATTGGTTAACC
3._ICS_8___
ATCCAAAAGGCGGGTTAATTGGTTAACC
4._ICS_8___
ATCCAAAAGGCGGGTTAATTGGTTAACC
5._ICS_8___
ATCCAAAAGGCGGGTTAATTGGTTAACC
6._ICS_8___
ATCCAAAAGGCGGGTTAATT__TTAACC
7._ICS_8___
ATCCAAAAGGCGGGTTAATTGGTTAACC
8._ICS_8___
______AA____GG________TTAA__
9._ICS_8___
______AA____GG________TTAA__
10._ICS_8___
______AA____GG________TTAA__
11._ICS_8___
______AA____GG________TTAA__
12._ICS_8___
______AA____GG________TTAA__
13._ICS_8___
______AA____GG________TTAA__
14._ICS_8___
______AA____GG________TTAA__
15._ICS_8___
______AA____GG________TTAA__
16._ICS_8___
______AA____GG________TTAA__
17._ICS_8___
ATCCAGAACC__GGAAAGAAGGTTAAGG
18._ICS_8___
TTCCGGAGCC__GGAAAGAAGGATAACG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAATTGGAGCCAAGGGTGGTTAATTAA
1._ICS_8___
GGAATTGGAGCCAAGGGTGGTTAATTAA
2._ICS_8___
GGAATTGGAGCCAAGGGTGGTTAATTAA
3._ICS_8___
GGAATTGGAGCCAAGGGTGGTTAATTAA
4._ICS_8___
GGAATTGGAGCCAAGGGTGGTTAATTAA
5._ICS_8___
GGAATTGGAGCCAAGGGTGGTTAATTAA
6._ICS_8___
GGAATTGGAGCCAAGGGTGGTTAATTAA
7._ICS_8___
GGAATTGGAGCCAAGGGTGGTTAATTAA
8._ICS_8___
GGAA______CC__GGGT____AA____
9._ICS_8___
GGAA______CC__GGGT____AA____
10._ICS_8___
GGAA______CC__GGGT____AA____
11._ICS_8___
GGAA______CC__GGGT____AA____
12._ICS_8___
GGAA______CC__GGGT____AA____
13._ICS_8___
GGAA______CC__GGGT____AA____
14._ICS_8___
GGAA______CC__GGGT____AA____
15._ICS_8___
GGAA______CC__GGGT____AA____
16._ICS_8___
GGAA______CC__GGGT____AA____
17._ICS_8___
CCAAAACCAGCCAAGGACCCAAAAAAAA
18._ICS_8___
CGAAAAACGGCGCCAGACCCAAAAAGAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCTTAACCGGAGAGCTCCGGGGTTTTCT
1._ICS_8___
CCTTAACCGGAGAGCTCCGGGGTTTTCT
2._ICS_8___
CCTTAACCGGAGAGCTCCGGGGTTTTCT
3._ICS_8___
CCTTAACCGGAGAGCTCCGGGGTTTTCT
4._ICS_8___
CCTTAACCGGAGAGCTCCGGGGTTTTCT
5._ICS_8___
CCTTAACCGGAGAGCTCCGGGGTTTTCT
6._ICS_8___
CCTTAACCGGAGAGCTCCGGGGTTTTCT
7._ICS_8___
CCTTAACCGGAGAGCTCCGGGGTTTTCT
8._ICS_8___
______CC__________________CT
9._ICS_8___
______CC__________________CT
10._ICS_8___
______CC__________________CT
11._ICS_8___
______CC__________________CT
12._ICS_8___
______CC__________________CT
13._ICS_8___
______CC__________________CT
14._ICS_8___
______CC__________________CT
15._ICS_8___
______CC__________________CT
16._ICS_8___
______CC__________________CT
17._ICS_8___
GGAA__GG__AGAAAG__GGGGAAAGAG
18._ICS_8___
GGCC__AG__AGAAGG__GGGGACAAAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGTAGCCTTCCACGGGGACAGTTGGGG
1._ICS_8___
TTGTAGCCTTCCACGGGGACAGTTGGGG
2._ICS_8___
TTGTAGCCTTCCACGGGGACAGTTGGGG
3._ICS_8___
TTGTAGCCTTCCACGGGGACAGTTGGGG
4._ICS_8___
TTGTAGCCTTCCACGGGGACAGTTGGGG
5._ICS_8___
TTGTAGCCTTCCACGGGGACAGTTGGGG
6._ICS_8___
TTGTAGCCTTCCACGGGGACAGTTGGGG
7._ICS_8___
TTGTAGCCTTCCACGGGGACAGTTGGGG
8._ICS_8___
TT____CC__CCACGG__ACAGTTGG__
9._ICS_8___
TT____CC__CCACGG__ACAGTTGG__
10._ICS_8___
TT____CC__CCACGG__ACAGTTGG__
11._ICS_8___
TT____CC__CCACGG__ACAGTTGG__
12._ICS_8___
TT____CC__CCACGG__ACAGTTGG__
13._ICS_8___
TT____CC__CCACGG__ACAGTTGG__
14._ICS_8___
TT____CC__CCACGG__ACAGTTGG__
15._ICS_8___
TT____CC__CCACGG__ACAGTTGG__
16._ICS_8___
TT________CCACGG__ACAGTTGG__
17._ICS_8___
AAACAGGGAAGGACGGGGACAGAACCGG
18._ICS_8___
AGAAAGGGAAGGAAGGGGCCAAAACCGG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCCGGTTAAAAACAAAACCGGCCAAAA
1._ICS_8___
TTCCGGTTAAAAACAAAACCGGCCAAAA
2._ICS_8___
TTCCGGTTAAAAACAAAACCGGCCAAAA
3._ICS_8___
TTCCGGTTAAAAACAAAACCGGCCAAAA
4._ICS_8___
TTCCGGTTAAAAACAAAACCGGCCAAAA
5._ICS_8___
TTCCGGTTAAAAACAAAACCGGCCAAAA
6._ICS_8___
TTCCGGTTAAAAACAAAACCGGCCAAAA
7._ICS_8___
TTCCGGTTAAAAACAAAACCGGCCAAAA
8._ICS_8___
____GGTT__________CCGG______
9._ICS_8___
____GGTT__________CCGG______
10._ICS_8___
____GGTT__________CCGG______
11._ICS_8___
____GGTT__________CCGG______
12._ICS_8___
____GGTT__________CCGG______
13._ICS_8___
____GGTT__________CCGG______
14._ICS_8___
____GGTT__________CCGG______
15._ICS_8___
____GGTT__________CCGG______
16._ICS_8___
____GGTT__________ACGG______
17._ICS_8___
______AAAAAAACAA__CCCCGGAAAA
18._ICS_8___
______AAACAACCAC__CCCCGGATAC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
1._ICS_8___
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
2._ICS_8___
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
3._ICS_8___
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
4._ICS_8___
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
5._ICS_8___
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
6._ICS_8___
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
7._ICS_8___
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
8._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
9._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
10._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
11._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
12._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
13._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
14._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
15._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
16._ICS_8___
TTCTTT__AA__CCTTTT____X_XX_XX_X
17._ICS_8___
AAAG__AA____GGAAAATTGGX_XX_XX_X
18._ICS_8___
AAAA__AG____GGACAATTGGX_XX_XX_X

Input profile: ICS_8 GC-08-054-1-65

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._ICS_8 GC-08-054-1-65

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._ICS_8 GC-08-054-1-65

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._ICS_8 GC-08-054-1-65

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._ICS_8 GC-08-054-1-65

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._ICS_8 GC-08-054-1-65

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._ICS_8 GC-08-054-1-65

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._ICS_8 GC-08-054-1-65

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 3 > FP
 Dapeng Zhang, 2016

9._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 6
 Dapeng Zhang, 2016

10._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 7
 Dapeng Zhang, 2016

11._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 8
 Dapeng Zhang, 2016

12._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 9
 Dapeng Zhang, 2016

13._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 2 > FP
 Dapeng Zhang, 2016

14._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 10
 Dapeng Zhang, 2016

15._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 1 > FP
 Dapeng Zhang, 2016

16._ICS_8

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block5
 Dapeng Zhang, 2016

17._ICS_8 GC-05-53-2-4

48.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: GC05, Block: 2, Rep: 4, Tree: 1
Notes: MCCS_Selection_parents
 Mars, 2018

18._ICS_8 GC-05-53-2-4

37 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: GC05, Block: 2, Rep: 4, Tree: 4
Notes: MCCS_Selection_parents
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240