SNP Profiles of ICS-8 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	TT	CC	GG	GG	CC	CC	CT	TT	GG	TT	CC	CC
1._GC-08-054-1-65	AA	AA	TT	CC	GG	GG	CC	CC	CT	TT	GG	TT	CC	CC
2._GC-08-054-1-65	AA	AA	TT	CC	GG	GG	CC	CC	CT	TT	GG	TT	CC	CC
3._GC-08-054-1-65	AA	AA	TT	CC	GG	GG	CC	CC	CT	TT	GG	TT	CC	CC
4._GC-08-054-1-65	AA	AA	TT	CC	GG	GG	CC	CC	CT	TT	GG	TT	CC	CC
5._GC-08-054-1-65	AA	AA	TT	CC	GG	GG	CC	CC	CT	TT	GG	TT	CC	CC
6._GC-08-054-1-65	AA	AA	TT	CC	GG	GG	CC	CC	CT	TT	GG	TT	_	CC
7._GC-08-054-1-65	AA	AA	TT	CC	GG	GG	CC	CC	_	TT	GG	TT	CC	CC
8._ICS_8	AA	AA	TT	CC	_	_	_	_	CT	TT	GG	_	CC	_
9._ICS_8	AA	AA	TT	CC	_	_	_	_	CT	TT	GG	_	CC	_
10._ICS_8	AA	AA	TT	CC	_	_	_	_	CT	TT	GG	_	CC	_
11._ICS_8	AA	AA	TT	CC	_	_	_	_	CT	TT	GG	_	CC	_
12._ICS_8	AA	AA	TT	CC	_	_	_	_	CT	TT	GG	_	CC	_
13._ICS_8	AA	AA	TT	CC	_	_	_	_	CT	TT	GG	_	CC	_
14._ICS_8	AA	AA	TT	CC	_	_	_	_	CT	TT	GG	_	_	_
15._ICS_8	AA	AA	TT	CC	_	_	_	_	_	TT	GG	_	CC	_
16._ICS_8	AA	AA	TT	CC	_	_	_	_	CT	TT	AG	_	CC	_
17._GC-05-53-2-4	AA	AA	_	CC	GG	GG	_	GG	AG	_	GG	AA	GG	GG
18._GC-05-53-2-4	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AA	AA	GG	CG	GG	TT	AA	TT	TT	AA	CC	GG
1._GC-08-054-1-65	AT	CC	AA	AA	GG	CG	GG	TT	AA	TT	TT	AA	CC	GG
2._GC-08-054-1-65	AT	CC	AA	AA	GG	CG	GG	TT	AA	TT	TT	AA	CC	GG
3._GC-08-054-1-65	AT	CC	AA	AA	GG	CG	GG	TT	AA	TT	TT	AA	CC	GG
4._GC-08-054-1-65	AT	CC	AA	AA	GG	CG	GG	TT	AA	TT	TT	AA	CC	GG
5._GC-08-054-1-65	AT	CC	AA	AA	GG	CG	GG	TT	AA	TT	TT	AA	CC	GG
6._GC-08-054-1-65	AT	CC	AA	AA	GG	CG	GG	TT	AA	TT	TT	AA	CC	GG
7._GC-08-054-1-65	AT	CC	AA	AA	GG	CG	GG	TT	AA	TT	TT	AA	CC	GG
8._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
9._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
10._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
11._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
12._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
13._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
14._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
15._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
16._ICS_8	_	_	_	AA	_	_	GG	_	_	_	TT	AA	_	GG
17._GC-05-53-2-4	AT	CC	AG	AA	CC	_	GG	AA	AG	AA	TT	AA	GG	CC
18._GC-05-53-2-4	TT	CC	GG	AG	CC	_	GG	AA	AG	AA	AT	AA	CG	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GG	AG	CC	AA	GG	GT	GG	TT	AA	TT	AA	CC
1._GC-08-054-1-65	AA	TT	GG	AG	CC	AA	GG	GT	GG	TT	AA	TT	AA	CC
2._GC-08-054-1-65	AA	TT	GG	AG	CC	AA	GG	GT	GG	TT	AA	TT	AA	CC
3._GC-08-054-1-65	AA	TT	GG	AG	CC	AA	GG	GT	GG	TT	AA	TT	AA	CC
4._GC-08-054-1-65	AA	TT	GG	AG	CC	AA	GG	GT	GG	TT	AA	TT	AA	CC
5._GC-08-054-1-65	AA	TT	GG	AG	CC	AA	GG	GT	GG	TT	AA	TT	AA	CC
6._GC-08-054-1-65	AA	TT	GG	AG	CC	AA	GG	GT	GG	TT	AA	TT	AA	CC
7._GC-08-054-1-65	AA	TT	GG	AG	CC	AA	GG	GT	GG	TT	AA	TT	AA	CC
8._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
9._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
10._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
11._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
12._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
13._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
14._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
15._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
16._ICS_8	AA	_	_	_	CC	_	GG	GT	_	_	AA	_	_	_
17._GC-05-53-2-4	AA	AA	CC	AG	CC	AA	GG	AC	CC	AA	AA	AA	AA	GG
18._GC-05-53-2-4	AA	AA	AC	GG	CG	CC	AG	AC	CC	AA	AA	AG	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AA	CC	GG	AG	AG	CT	CC	GG	GG	TT	TT	CT	TT
1._GC-08-054-1-65	TT	AA	CC	GG	AG	AG	CT	CC	GG	GG	TT	TT	CT	TT
2._GC-08-054-1-65	TT	AA	CC	GG	AG	AG	CT	CC	GG	GG	TT	TT	CT	TT
3._GC-08-054-1-65	TT	AA	CC	GG	AG	AG	CT	CC	GG	GG	TT	TT	CT	TT
4._GC-08-054-1-65	TT	AA	CC	GG	AG	AG	CT	CC	GG	GG	TT	TT	CT	TT
5._GC-08-054-1-65	TT	AA	CC	GG	AG	AG	CT	CC	GG	GG	TT	TT	CT	TT
6._GC-08-054-1-65	TT	AA	CC	GG	AG	AG	CT	CC	GG	GG	TT	TT	CT	TT
7._GC-08-054-1-65	TT	AA	CC	GG	AG	AG	CT	CC	GG	GG	TT	TT	CT	TT
8._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
9._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
10._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
11._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
12._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
13._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
14._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
15._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
16._ICS_8	_	_	CC	_	_	_	_	_	_	_	_	_	CT	TT
17._GC-05-53-2-4	AA	_	GG	_	AG	AA	AG	_	GG	GG	AA	AG	AG	AA
18._GC-05-53-2-4	CC	_	AG	_	AG	AA	GG	_	GG	GG	AC	AA	AG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GT	AG	CC	TT	CC	AC	GG	GG	AC	AG	TT	GG	GG	TT
1._GC-08-054-1-65	GT	AG	CC	TT	CC	AC	GG	GG	AC	AG	TT	GG	GG	TT
2._GC-08-054-1-65	GT	AG	CC	TT	CC	AC	GG	GG	AC	AG	TT	GG	GG	TT
3._GC-08-054-1-65	GT	AG	CC	TT	CC	AC	GG	GG	AC	AG	TT	GG	GG	TT
4._GC-08-054-1-65	GT	AG	CC	TT	CC	AC	GG	GG	AC	AG	TT	GG	GG	TT
5._GC-08-054-1-65	GT	AG	CC	TT	CC	AC	GG	GG	AC	AG	TT	GG	GG	TT
6._GC-08-054-1-65	GT	AG	CC	TT	CC	AC	GG	GG	AC	AG	TT	GG	GG	TT
7._GC-08-054-1-65	GT	AG	CC	TT	CC	AC	GG	GG	AC	AG	TT	GG	GG	TT
8._ICS_8	_	_	CC	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
9._ICS_8	_	_	CC	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
10._ICS_8	_	_	CC	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
11._ICS_8	_	_	CC	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
12._ICS_8	_	_	CC	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
13._ICS_8	_	_	CC	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
14._ICS_8	_	_	CC	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
15._ICS_8	_	_	CC	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
16._ICS_8	_	_	_	_	CC	AC	GG	_	AC	AG	TT	GG	_	_
17._GC-05-53-2-4	AC	AG	GG	AA	GG	AC	GG	GG	AC	AG	AA	CC	GG	_
18._GC-05-53-2-4	AA	AG	GG	AA	GG	AA	GG	GG	CC	AA	AA	CC	GG	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	TT	AA	AA	AC	AA	AA	CC	GG	CC	AA	AA	TT
1._GC-08-054-1-65	CC	GG	TT	AA	AA	AC	AA	AA	CC	GG	CC	AA	AA	TT
2._GC-08-054-1-65	CC	GG	TT	AA	AA	AC	AA	AA	CC	GG	CC	AA	AA	TT
3._GC-08-054-1-65	CC	GG	TT	AA	AA	AC	AA	AA	CC	GG	CC	AA	AA	TT
4._GC-08-054-1-65	CC	GG	TT	AA	AA	AC	AA	AA	CC	GG	CC	AA	AA	TT
5._GC-08-054-1-65	CC	GG	TT	AA	AA	AC	AA	AA	CC	GG	CC	AA	AA	TT
6._GC-08-054-1-65	CC	GG	TT	AA	AA	AC	AA	AA	CC	GG	CC	AA	AA	TT
7._GC-08-054-1-65	CC	GG	TT	AA	AA	AC	AA	AA	CC	GG	CC	AA	AA	TT
8._ICS_8	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
9._ICS_8	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
10._ICS_8	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
11._ICS_8	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
12._ICS_8	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
13._ICS_8	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
14._ICS_8	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
15._ICS_8	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
16._ICS_8	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
17._GC-05-53-2-4	_	_	AA	AA	AA	AC	AA	_	CC	CC	GG	AA	AA	AA
18._GC-05-53-2-4	_	_	AA	AC	AA	CC	AC	_	CC	CC	GG	AT	AC	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
1._GC-08-054-1-65	CT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
2._GC-08-054-1-65	CT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
3._GC-08-054-1-65	CT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
4._GC-08-054-1-65	CT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
5._GC-08-054-1-65	CT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
6._GC-08-054-1-65	CT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
7._GC-08-054-1-65	CT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
8._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
9._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
10._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
11._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
12._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
13._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
14._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
15._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
16._ICS_8	CT	TT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
17._GC-05-53-2-4	AG	_	AA	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X
18._GC-05-53-2-4	AA	_	AG	_	_	GG	AC	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: ICS_8 GC-08-054-1-65

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

1._ICS_8 GC-08-054-1-65

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

2._ICS_8 GC-08-054-1-65

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._ICS_8 GC-08-054-1-65

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._ICS_8 GC-08-054-1-65

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

5._ICS_8 GC-08-054-1-65

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

6._ICS_8 GC-08-054-1-65

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

7._ICS_8 GC-08-054-1-65

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 3 > FP

Dapeng Zhang, 2016

9._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 7

Dapeng Zhang, 2016

11._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 8

Dapeng Zhang, 2016

12._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 9

Dapeng Zhang, 2016

13._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 2 > FP

Dapeng Zhang, 2016

14._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 10

Dapeng Zhang, 2016

15._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 1 > FP

Dapeng Zhang, 2016

16._ICS_8

97.4 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block5

Dapeng Zhang, 2016

17._ICS_8 GC-05-53-2-4

48.1 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: GC05, Block: 2, Rep: 4, Tree: 1

Notes: MCCS_Selection_parents

18._ICS_8 GC-05-53-2-4

36.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: GC05, Block: 2, Rep: 4, Tree: 4

Notes: MCCS_Selection_parents

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240