SNP Profiles of TSA-644   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTACGGAGCTCTTTCTAGTTCTTT
1._GC-08-175-4-18
AACCCTACGGAGCTCTTTCTAGTTCTTT
2._GC-08-174-4-17
AACCCTACGGAGCTCTTTCTAGTTCTTT
3._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
4._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
5._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
6._GC-08-174-4-17
AACCCTACGGAGCTCTTTCTAGTTCTTT
7._GC-04-034-2-16
AACCCTACGGAGCTCTTTCTAGTTCTTT
8._TSA_644
AACCCTAC____TTCTAG_CT_
9._TSA_644
AACCCTAC____TTCTAG_CT_
10._TSA_644
AACCCTAC____TTCTAG_CT_
11._TSA_644
AACCCTAC____TTCTAG_CT_
12._TSA_644
AACCCTAC____TTCTAG_CT_
13._GC-08-174-4-17
AACCTTACGGAGCTCTTTCTAGTTCTTT
14._TSA_644
AACCCTAA_____CTAG_CT_
15._GC-08-175-4-18
_CCCT_AAAATTTTTTTTAGTTCTCT
16._GC-08-174-4-17
TTCCCTACAAAATTTTTTTTAGTTCTCT
17._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
18._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
19._GC-08-175-4-18
TTCCCTACAAAATTTTTTTTAGTTCTCT
20._GC-08-174-4-17
TTCCCTACAAAATTTTTTTTAGTTCTCT
 1516171819202122232425262728
_Input profile
ATAAAAAGCGCCCGCCAACTGGATAACG
1._GC-08-175-4-18
ATAAAAAGCGCCCGCCAACTGGATAACG
2._GC-08-174-4-17
ATAAAAAGCGCCCGCCAACTGGATAACG
3._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
4._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
5._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
6._GC-08-174-4-17
ATAAAAAGCGCCCGCCAACTGGATAACG
7._GC-04-034-2-16
ATAAAAAGCGCCCGCCAACTGGATAACG
8._TSA_644
___AG__CG____ATAA_
9._TSA_644
___AG__CG____ATAA_
10._TSA_644
___AG__CG____ATAA_
11._TSA_644
___AG__CG____ATAA_
12._TSA_644
___AG__CG____ATAA_
13._GC-08-174-4-17
ATAAAAAGCGCCCGCCAACTGGATAACG
14._TSA_644
___AG__CG____ATAA_
15._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
16._GC-08-174-4-17
AAACAAAGCCCGCGCCAACTGGAAATGG
17._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
18._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
19._GC-08-175-4-18
AAACAAAGCCCGCGCCAACTGGAAATGG
20._GC-08-174-4-17
AAACAAAGCCCGCGCCAACTGGAAATGG
 2930313233343536373839404142
_Input profile
CCATTTTTGGGGCCAAGGGTTTAGCCGG
1._GC-08-175-4-18
CCATTTTTGGGGCCAAGGGTTTAGCCGG
2._GC-08-174-4-17
CCATTTTTGGGGCCAAGGGTTTAGCCGG
3._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
4._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
5._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
6._GC-08-174-4-17
CCATTTTTGGGGCCAAGGGTTTAGCCGG
7._GC-04-034-2-16
CCATTTTTGGGGCCAAGGGTTTAGCCGG
8._TSA_644
CCAT___GG_AAGG__AG__
9._TSA_644
CCAT___GG_AAGG__AG__
10._TSA_644
CCAT___GG_AAGG__AG__
11._TSA_644
CCAT___GG_AAGG__AG__
12._TSA_644
CCAT___GG_AAGG__AG__
13._GC-08-174-4-17
CCATTTTTGGGGCCAAGGGTTTAGCCGG
14._TSA_644
CC____GG__GG__AG__
15._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
16._GC-08-174-4-17
CGATCTGTGGCGCCAAGTGTTTAGCCAG
17._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
18._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
19._GC-08-175-4-18
CGATCTGTGGCGCCAAGTGTTTAGCCAG
20._GC-08-174-4-17
CGATCTGTGGCGCCAAGTGTTTAGCCAG
 4344454647484950515253545556
_Input profile
CGGGTTTTAGAGAACCACAGAAGGTTTT
1._GC-08-175-4-18
CGGGTTTTAGAGAACCACAGAAGGTTTT
2._GC-08-174-4-17
CGGGTTTTAGAGAACCACAGAAGGTTTT
3._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGGTTTT
4._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGGTTTT
5._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGGTTTT
6._GC-08-174-4-17
CGGGTTTTAGAGAACC_AGAAGGTTTT
7._GC-04-034-2-16
CGGGTTTTAGAGAACCACAGAAGG_TT
8._TSA_644
___TT_________TT
9._TSA_644
___TT_________TT
10._TSA_644
___TT_________TT
11._TSA_644
___TT_________TT
12._TSA_644
___TT_________TT
13._GC-08-174-4-17
CGGGTTTTAGAGAACCACAGAAGGTTTT
14._TSA_644
___TT_________TT
15._GC-08-175-4-18
CGGGTTCTAAAGAACCACAGAAGT_TT
16._GC-08-174-4-17
CGGGTTCTAAAGAACCACAGAAGT_TT
17._GC-08-175-4-18
CGGGTTCTAAAGAACCACAGAAGT_TT
18._GC-08-175-4-18
CGGGTTCTAAAGAACCACAGAAGT_TT
19._GC-08-175-4-18
CGGGTTCTAAAGAACCACAGAAGT_TT
20._GC-08-174-4-17
CGGGTTCTAAAGAACCACAGAAGT_TT
 5758596061626364656667686970
_Input profile
CCTTGGCCCCTTACCGGGACAGGGGGAG
1._GC-08-175-4-18
CCTTGGCCCCTTACCGGGACAGGGGGAG
2._GC-08-174-4-17
CCTTGGCCCCTTACCGGGACAGGGGGAG
3._GC-04-034-2-16
CCTTGGCCCCTTACCGGGACAGGGGGAG
4._GC-04-034-2-16
CCTTGGCCCCTTACCGGGACAGGGGGAG
5._GC-04-034-2-16
CCTTGGCCCCTTACCGGGACAGGGGGAG
6._GC-08-174-4-17
CCTTGGCCCCTTACCGGGACAGGGGGAG
7._GC-04-034-2-16
CCTTGGCCCCTTACCGGGACAGGGGGAG
8._TSA_644
CC__CC_TTACCG_ACAGGGGG_
9._TSA_644
CC__CC_TTACCG_ACAGGGGG_
10._TSA_644
CC__CC_TTACCG_ACAGGGGG_
11._TSA_644
CC__CC_TTACCG_ACAGGGGG_
12._TSA_644
CC__CC_TTACCG_ACAGGGGG_
13._GC-08-174-4-17
CCTTGGCCCCTTACCGGGACAGGGGGAG
14._TSA_644
___CC_TTACCG_ACAG_GG_
15._GC-08-175-4-18
CTTTGGCCCCCCCCCCGGCCAGGGGTAA
16._GC-08-174-4-17
CTTTGGCCCCCCCCCCGGCCAGGGGTAA
17._GC-08-175-4-18
CTTTGGCCCCCCCCCCGGCCAGGGGTAA
18._GC-08-175-4-18
CTTTGGCCCCCCCCCCGGCCAGGGGTAA
19._GC-08-175-4-18
CTTTGGCCCCCCCCCCGGCCAGGGGTAA
20._GC-08-174-4-17
CTTTGGCCCCCCCCCCGGCCAGGGGTAA
 7172737475767778798081828384
_Input profile
TTCCAACCCCAGCCCCAAACCCCCAACC
1._GC-08-175-4-18
TTCCAACCCCAGCCCCAAACCCCCAACC
2._GC-08-174-4-17
TTCCAACCCCAGCCCCAAACCCCCAACC
3._GC-04-034-2-16
TTCCAACCCCAGCCCCAAACCCCCAACC
4._GC-04-034-2-16
TTCCAACCCCAGCCCCAAACCCCCAACC
5._GC-04-034-2-16
TTCCAACCCCAGCCCCAAACCCCCAACC
6._GC-08-174-4-17
TTCCAACCCCAGCCCCAAACCCCCAACC
7._GC-04-034-2-16
TTCCAACCCCAGCCCCAAACCCCCAACC
8._TSA_644
__AACC_____ACCC___
9._TSA_644
__AACC_____ACCC___
10._TSA_644
__AACC_____ACCC___
11._TSA_644
__AACC_____ACCC___
12._TSA_644
__AACC_____ACCC___
13._GC-08-174-4-17
TTCCAACCCCAGCCCCAAACCCCCAACC
14._TSA_644
__AGCC_____ACCC___
15._GC-08-175-4-18
TTCCAACTACAGCCACAAACCGCCAACC
16._GC-08-174-4-17
TTCCAACTACAGCCACAAACCGCCAACC
17._GC-08-175-4-18
TTCCAACTACAGCCACAAACCGCCAACC
18._GC-08-175-4-18
TTCCAACTACAGCCACAAACCGCCAACC
19._GC-08-175-4-18
TTCCAACTACAGCCACAAACCGCCAACC
20._GC-08-174-4-17
TTCCAACTACAGCCACAAACCGCCAACC
 8586878889909192939495   
_Input profile
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
1._GC-08-175-4-18
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
2._GC-08-174-4-17
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
3._GC-04-034-2-16
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
4._GC-04-034-2-16
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
5._GC-04-034-2-16
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
6._GC-08-174-4-17
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
7._GC-04-034-2-16
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
8._TSA_644
CTCTCC_AG_TTGTCT__X_XX_XX_X
9._TSA_644
CTCTCC_AG_TTGTCT__X_XX_XX_X
10._TSA_644
CTCTCC_AG_TTGTCT__X_XX_XX_X
11._TSA_644
CTCTCC_AG_TTGTCT__X_XX_XX_X
12._TSA_644
CTCTCC_AG_TTGTCT__X_XX_XX_X
13._GC-08-174-4-17
CTCTCCCTAGCCTTGTCTTTAGX_XX_XX_X
14._TSA_644
CTCT____TTGTCT__X_XX_XX_X
15._GC-08-175-4-18
TTCTCTCTAGCCCCGTCCATAGX_XX_XX_X
16._GC-08-174-4-17
TTCTCTCTAGCCCCGTCCATAGX_XX_XX_X
17._GC-08-175-4-18
TTCTCTCTAGCCCCGTCCATAGX_XX_XX_X
18._GC-08-175-4-18
TTCTCTCTAGCCCCGTCCATAGX_XX_XX_X
19._GC-08-175-4-18
TTCTCTCTAGCCCCGTCCATAGX_XX_XX_X
20._GC-08-174-4-17
TTCTCTCTAGCCCCGTCCATAGX_XX_XX_X

Input profile: TSA_644 GC-04-034-2-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

1._TSA_644 GC-08-175-4-18

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._TSA_644 GC-08-174-4-17

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._TSA_644 GC-04-034-2-16

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._TSA_644 GC-04-034-2-16

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._TSA_644 GC-04-034-2-16

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

6._TSA_644 GC-08-174-4-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._TSA_644 GC-04-034-2-16

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 7 > FP
 Dapeng Zhang, 2016

9._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 4 > FP
 Dapeng Zhang, 2016

10._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 3 > FP
 Dapeng Zhang, 2016

11._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 2 > FP
 Dapeng Zhang, 2016

12._TSA_644

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._TSA_644 GC-08-174-4-17

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._TSA_644

97 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 8, Row 1 13_15
 Dapeng Zhang, 2016

15._TSA_644 GC-08-175-4-18

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._TSA_644 GC-08-174-4-17

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._TSA_644 GC-08-175-4-18

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._TSA_644 GC-08-175-4-18

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._TSA_644 GC-08-175-4-18

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._TSA_644 GC-08-174-4-17

77.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240