SNP Profiles of GU-168H   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GU_168_/H
AACCCC____CCCCGG_CC__
2._GU_168_/H
AACCCC____CCCCGG_CC__
3._GU_168_/H
AACCCC____CCCCGG_CC__
4._GU_168_/H
AACCCC____CCCCGG_CC__
5._GU_168_/H
AACCCC____CCCCGG_CC__
6._GU_168_/H
AACCCC____CCCCGG_CC__
7._GU_168_/H
AACCCC____CCCCGG_CC__
8._GU_168_/H
AACCCC____CCCCGG_CC__
9._GU_168_/H
AACCCC____CCCCGG_CC__
10._GU_168_/H
AACCCC____CCCCGG_CC__
11._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
12._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
13._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
14._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
15._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
16._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
17._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
18._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
19._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
20._RUQ_223
_CCCC__CC_CC__TTCC__
21._RUQ_223
AACCCC____CCCCAG_CC__
22._GU_168_/H
AATTCC____CCCCGG_CC__
23._GC-03-023-2-12
AATTCCGGGGCCCCCCCCGGTTCCCTAA
24._GC-03-23-2-12
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GU_168_/H
_GG__GG____TTAA_GGAA
2._GU_168_/H
_GG__GG____TTAA_GGAA
3._GU_168_/H
_GG__GG____TTAA_GGAA
4._GU_168_/H
_GG__GG____TTAA_GGAA
5._GU_168_/H
_GG__GG____TTAA_GGAA
6._GU_168_/H
_GG__GG____TTAA_GGAA
7._GU_168_/H
_GG__GG____TTAA_GGAA
8._GU_168_/H
_GG__GG____TTAA_GGAA
9._GU_168_/H
_GG__GG____TTAA_GGAA
10._GU_168_/H
_GG__GG____TTAA_GGAA
11._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
12._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
13._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
14._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
15._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
16._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
17._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
18._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
19._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
20._RUQ_223
___CC____GG_AACCGG_
21._RUQ_223
_GG__GG____ATAA_GGAA
22._GU_168_/H
_AA__CC____TTAA_GGAA
23._GC-03-023-2-12
CCAAGGCCCCTTAATTGGTTAACCGGAA
24._GC-03-23-2-12
CCGGCC_GGAAAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GU_168_/H
___CC_GGTT__GG____
2._GU_168_/H
___CC_GGTT__GG____
3._GU_168_/H
_____GGTT__GG____
4._GU_168_/H
___CC_GGTT__GG____
5._GU_168_/H
___CC_GGTT__GG____
6._GU_168_/H
___CC_GGTT__GG____
7._GU_168_/H
___CC_GGTT__GG____
8._GU_168_/H
___CC_GGTT__GG____
9._GU_168_/H
___CC_GGTT__GG____
10._GU_168_/H
___CC_GGTT__GG____
11._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
12._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
13._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
14._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
15._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
16._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
17._GC-03-023-2-12
TTTTGG_CCGGTTGGGGGGCCGGCCGG
18._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
19._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
20._RUQ_223
__GGCCCCAGTT__AGCC__GG
21._RUQ_223
___CC_AGTT__AG____
22._GU_168_/H
___CC_GGTT__AA____
23._GC-03-023-2-12
TTGGAACCCCGGTTGGTTAATTAACCGG
24._GC-03-23-2-12
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GU_168_/H
_TT_________TTCC_
2._GU_168_/H
_TT__________CC_
3._GU_168_/H
_TT_________TTCC_
4._GU_168_/H
_TT_________TTCC_
5._GU_168_/H
_TT_________TTCC_
6._GU_168_/H
_TT_________TTCC_
7._GU_168_/H
_TT_________TTCC_
8._GU_168_/H
_TT_________TTCC_
9._GU_168_/H
_TT_________TTCC_
10._GU_168_/H
_TT_________TTCC_
11._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
12._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
13._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
14._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
15._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTT_CCTT
16._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
17._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
18._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
19._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
20._RUQ_223
TT__GG______TTTT_TT
21._RUQ_223
_TT_________TTCC_
22._GU_168_/H
_CC_________CCTT_
23._GC-03-023-2-12
TTCCAAGGAACCCCGGGGTTTTCCTTTT
24._GC-03-23-2-12
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GU_168_/H
_CC_CCAAGG__GGGGGG___
2._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
3._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
4._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
5._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
6._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
7._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
8._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
9._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
10._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
11._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
12._GC-03-023-2-12
GGCCCCCCAAGGGG_GGGGGGAACCCC
13._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
14._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
15._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
16._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
17._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
18._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
19._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
20._RUQ_223
-CCCCCCAA_GGAAGGGGGGAA__
21._RUQ_223
_CC_CCAAGG_AAGGGGGG___
22._GU_168_/H
_CC_CTAAGG_ACAATTGG___
23._GC-03-023-2-12
_CCTTCTAAGGGGACAATTGGGGTTCC
24._GC-03-23-2-12
GGGGGGGGAAGGGGAAGGCCCCAA__
 7172737475767778798081828384
_Input profile
AGCCCCAACCCCGGAACCCCTTAACCCC
1._GU_168_/H
AGCC_____AACC___CCCC
2._GU_168_/H
AGCC_____AACC___CCCC
3._GU_168_/H
AGCC_____AACC___CCCC
4._GU_168_/H
AGCC_____AACC___CCCC
5._GU_168_/H
AGCC_____AACC___CCCC
6._GU_168_/H
AGCC_____AACC___CCCC
7._GU_168_/H
AGCC_____AACC___CCCC
8._GU_168_/H
AGCC_____AACC___CCCC
9._GU_168_/H
AGCC_____AACC___CCCC
10._GU_168_/H
AGCC_____AACC___CCCC
11._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
12._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
13._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
14._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
15._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
16._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
17._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
18._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
19._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
20._RUQ_223
_______AAGG__AACC_
21._RUQ_223
AACC_____AAGG___CCCT
22._GU_168_/H
GGTT_____CCGG___TTTT
23._GC-03-023-2-12
GGTTAAAACCAAAACCGGCCTTAATTTT
24._GC-03-23-2-12
_GGCCAACCCC_AAGGGGTTAAGGGG
 858687888990919293     
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
2._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
3._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
4._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
5._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
6._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
7._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
8._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
9._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
10._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
11._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
16._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
17._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
18._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
19._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
20._RUQ_223
__AGCCCCTT___X_XX_XX_XX_XX_X
21._RUQ_223
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
22._GU_168_/H
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
23._GC-03-023-2-12
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
24._GC-03-23-2-12
_GG__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_168_/H GC-03-023-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

2._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

3._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

4._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

5._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

6._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

7._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

8._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

9._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

10._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

12._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

16._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

18._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._GU_168_/H RUQ_223

91.9 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

87.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

23._GU_168_/H GC-03-023-2-12

65.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H GC-03-23-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240