SNP Profiles of MO-20   View Data

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 1234567891011121314
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._MO_20
AACCAC____CCCCGG_CC__
2._RUQ_1566
_-CC__-_-__--__
3._GC-01-121-6-18
AACTCCGGAACTCTCTCTGGCTCTCTAA
4._GC-08-167-4-10
AACTCCGGAACTCTCTCTGG_CTCTAA
5._GC-08-167-4-10
AACTCCGGAACTCTCTCTGG_CTCTAA
6._GC-08-167-4-10
AACTCCGGAACTCTCTCTGGCTCTCTAA
7._GC-01-121-6-18
AACTCCGGAACTCTCTCTGGCTCTCTAA
8._GC-01-121-6-18
AACTCCGGAACTCTCTCTGGCTCTCTAA
9._GC-01-121-6-18
AACTCCGGAACTCTCTCTGGCTCTCTAA
10._GC-01-121-6-18
AACTCCGGAACTCTCTCTGGCTCTCTAA
11._GC-01-121-6-18
AACTCCGGAACTCTCTCTGGCTCTCTAA
12._GC-08-167-4-10
AACTCCGGAACTCTCTCTGGCTCTCTAA
13._MO_20
AACTCC____CTCTGG_CT__
14._MO_20
AACTCC____CTCTGG_CT__
15._MO_20
AACTCC____CTCTGG_CT__
16._MO_20
AACTCC____CTCTGG_CT__
17._MO_20
AACTCC____CTCTGG_CT__
18._MO_20
AACTCC____CTCTGG_CT__
19._MO_20
AACTCC____CTCTGG_CT__
20._MO_20
AACTCC____CTCTGG_CT__
21._MO_20
AACTCC____CTCTGG_CT__
22._MO_20
AACTCC____CTCTGG_CT__
23._MO_20
AACTCC____CTCTGG_CT__
24._RUQ_1566
__CC____CT___CT__
25._MO_20
TTCCCC____CCCTAG_TT__
26._RUQ_1566
__CC__TT________
27._MO_20_Fld#_171_Plt#_1
AA_CCGGAA_AGAG_GGAGAGAGTT
28._RUQ_1566
AA_CCGGAA_AGAG_GGAGAGAGTT
29._MITC-000675
AA_CCGGAA_AGAG_GGAGAGAGTT
30._MO_20_Fld#_74_Plt#_1
AA_CCGGAG_GGAG_GGAAGGGGAT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._MO_20
_GG__GG____TTAA_GGAA
2._RUQ_1566
___-____-_---_
3._GC-01-121-6-18
ACAGCGCGCGCCAGCTGGATAACGCGAT
4._GC-08-167-4-10
ACAGCGCGCGCCAGCTGGATAACGCGAT
5._GC-08-167-4-10
ACAGCGCGCGCCAGCTGGATAACGCGAT
6._GC-08-167-4-10
ACAGCGCGCGCCAGCTGGATAACGCGAT
7._GC-01-121-6-18
ACAGCGCGCGCCAGCTGGATAACGCGAT
8._GC-01-121-6-18
ACAGCGCGCGCCAGCTGGATAACGCGAT
9._GC-01-121-6-18
ACAGCGCGCGCCAGCTGGATAACGCGAT
10._GC-01-121-6-18
ACAGCGCGCGCCAGCTGGATAACGCGAT
11._GC-01-121-6-18
ACAGCGCGCGCCAGCTGGATAACGCGAT
12._GC-08-167-4-10
ACAGCGCGCGCCAGCTGGATAACGCGAT
13._MO_20
_AG__CG____ATAA_CGAT
14._MO_20
_AG__CG____ATAA_CGAT
15._MO_20
_AG__CG____ATAA_CGAT
16._MO_20
_AG__CG____ATAA_CGAT
17._MO_20
_AG__CG____ATAA_CGAT
18._MO_20
_AG__CG____ATAA_CGAT
19._MO_20
_AG__CG____ATAA_CGAT
20._MO_20
_AG__CG____ATAA_CGAT
21._MO_20
_AG__CG____ATAA_CGAT
22._MO_20
_AG__CG____ATAA_CGAT
23._MO_20
_AG__CG____ATAA_CGAT
24._RUQ_1566
___CG_CC__GG_AACCCG_
25._MO_20
_GG__GG____AATT_CCTT
26._RUQ_1566
_AGCT_________CG_
27._MO_20_Fld#_171_Plt#_1
ACAGCG_CGGGAAAGGGATAACGCGAT
28._RUQ_1566
ACAGCG_CGGGAAAGGGATAACGCGAT
29._MITC-000675
ACAGCG_CGGGAAAGGGATAACGCGAT
30._MO_20_Fld#_74_Plt#_1
CCAACC_GGAGGGAAAGATATCGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._MO_20
___CC_GGTT__GG____
2._RUQ_1566
__GG-CC--__--__GG
3._GC-01-121-6-18
TTGTAGCGCCAAGTGTTTAACTAGCCGT
4._GC-08-167-4-10
TTGTAGCGCCAAGTGTTTAACTAGCCGT
5._GC-08-167-4-10
TTGTAGCGCCAAGTGTTTAACTAGCCGT
6._GC-08-167-4-10
TTGTAGCGCCAAGTGTTTAACTAGCCGT
7._GC-01-121-6-18
TTGTAGCGCCAAGTGTTTAACTAGCCGT
8._GC-01-121-6-18
TTGTAGCGCCAAGTGTTTAACTAGCCGT
9._GC-01-121-6-18
TTGTAGCGCCAAGTGTTTAACTAGCCGT
10._GC-01-121-6-18
TTGTAGCGCCAAGTGTTTAACTAGCCGT
11._GC-01-121-6-18
TTGTAGCGCCAAGTGTTTAACTAGCCGT
12._GC-08-167-4-10
TTGTAGCGCCAAGTGTTTAACTAGCCGT
13._MO_20
___CG_AAGT__AA____
14._MO_20
___CG_AAGT__AA____
15._MO_20
___CG_AAGT__AA____
16._MO_20
___CG_AAGT__AA____
17._MO_20
___CG_AAGT__AA____
18._MO_20
___CG_AAGT__AA____
19._MO_20
___CG_AAGT__AA____
20._MO_20
___CG_AAGT__AA____
21._MO_20
___CG_AAGT__AA____
22._MO_20
___CG_AAGT__AA____
23._MO_20
___CG_AAGT__AA____
24._RUQ_1566
__AGCG____TT_CT___
25._MO_20
___GG_AAGG__GG____
26._RUQ_1566
___CG_AA____CT___
27._MO_20_Fld#_171_Plt#_1
AAACAGCGCCAAACACAAAAAGAGGGAC
28._RUQ_1566
AAACAGCGCCAAACACAAAAAGAGGGAC
29._MITC-000675
AAACAGCGCCAAACACAAAAAGAGGGAC
30._MO_20_Fld#_74_Plt#_1
AGCCAGCCCCAGACCCACAAAGAAGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._MO_20
_TT_________TTCC_
2._RUQ_1566
-__-______--_-
3._GC-01-121-6-18
ATCTGGAGAGCTACAGAGGGTTCTCTTT
4._GC-08-167-4-10
ATCTGGAGAGCTACAGAGGGTTCTCTTT
5._GC-08-167-4-10
ATCTGGAGAGCTACAGAGGGTTCTCTTT
6._GC-08-167-4-10
ATCTGGAGAGCTACAGAGGGTTCTCTTT
7._GC-01-121-6-18
ATCTGGAGAGCTACAGAGGGTTCTCTTT
8._GC-01-121-6-18
ATCTGGAGAGCTACAGAGGGTTCTCTTT
9._GC-01-121-6-18
ATCTGGAGAGCTACAGAGGGTTCTCTTT
10._GC-01-121-6-18
ATCTGGAGAGCTACAGAGGGTTCTCTTT
11._GC-01-121-6-18
ATCTGGAGAGCTACAGAGGGTTCTCTTT
12._GC-08-167-4-10
ATCTGGAGAGCTACAGAGGGTTCTCTTT
13._MO_20
_CT_________CTCT_
14._MO_20
_CT_________CTCT_
15._MO_20
_CT_________CTCT_
16._MO_20
_CT_________CTCT_
17._MO_20
_CT_________CTCT_
18._MO_20
_CT_________CTCT_
19._MO_20
_CT_________CTCT_
20._MO_20
_CT_________CTCT_
21._MO_20
_CT_________CTCT_
22._MO_20
_CT_________CTCT_
23._MO_20
_CT_________CTCT_
24._RUQ_1566
AT_GG________CT__
25._MO_20
_TT_________TTCC_
26._RUQ_1566
___AG__________
27._MO_20_Fld#_171_Plt#_1
_AG_AGAGAG_AGAGCCAGAGAGAA
28._RUQ_1566
_AG_AGAGAG_AGAGCCAGAGAGAA
29._MITC-000675
_AG_AGAGAG_AGAGCCAGAGAGAA
30._MO_20_Fld#_74_Plt#_1
_GG_GGAAAG_GGGGACAAAGAGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._MO_20
_CC_CCAAGG_AAGGGGGG___
2._RUQ_1566
-CCCCTT-_---GG--__
3._GC-01-121-6-18
AGCC_TTACCGAGACAGGTGGAGTTCC
4._GC-08-167-4-10
AGCCCTTTACCGAGACAGGTGGAGTTCC
5._GC-08-167-4-10
AGCCCTTTACCGAGACAGGTGGAGTTCC
6._GC-08-167-4-10
AGCCCTTTACCGAGACAGGTGGAGTTCC
7._GC-01-121-6-18
AGCCCTTTACCGAGACAGGTGGAGTTCC
8._GC-01-121-6-18
AGCCCTTTACCGAGACAGGTGGAGTTCC
9._GC-01-121-6-18
AGCCCTTTACCGAGACAGGTGGAGTTCC
10._GC-01-121-6-18
AGCCCTTTACCGAGACAGGTGGAGTTCC
11._GC-01-121-6-18
AGCCCTTTACCGAGACAGGTGGAGTTCC
12._GC-08-167-4-10
AGCCCTTTACCGAGACAGGTGGAGTTCC
13._MO_20
_CC_TTACCG_ACAGGTGG___
14._MO_20
_CC_TTACCG_ACAGGTGG___
15._MO_20
_CC_TTACCG_ACAGGTGG___
16._MO_20
_CC_TTACCG_ACAGGTGG___
17._MO_20
_CC_TTACCG_ACAGGTGG___
18._MO_20
_CC_TTACCG_ACAGGTGG___
19._MO_20
_CC_TTACCG_ACAGGTGG___
20._MO_20
_CC_TTACCG_ACAGGTGG___
21._MO_20
_CC_TTACCG_ACAGGTGG___
22._MO_20
_CC_TTACCG_ACAGGTGG___
23._MO_20
_CC_TTACCG_ACAGGTGG___
24._RUQ_1566
_GGCT_AC_AGCCAG____CC
25._MO_20
_CC_TTCCCC_CCAAGGGT___
26._RUQ_1566
AG______ACAG_GGAG__
27._MO_20_Fld#_171_Plt#_1
AGGGAGAAACCGAGACAGACCCAG__
28._RUQ_1566
AGGGAGAAACCGAG_AGACCCAG__
29._MITC-000675
AGGGAGAAACCGAG_AGACCCAG__
30._MO_20_Fld#_74_Plt#_1
AGGGAGAGAAGGGGCCAAAACCGG__
 7172737475767778798081828384
_Input profile
GGCCAAAGCCCCGGAACGCCTTAACCCT
1._MO_20
GGCC_____AACG___CCCT
2._RUQ_1566
_______AC-__CC-_
3._GC-01-121-6-18
_CTACGGCCACAGACCCCCATCCTTCT
4._GC-08-167-4-10
AACTACGGCCACAGACCCCCATCCTTCT
5._GC-08-167-4-10
AACTACGGCCACAGACCCCCATCCTTCT
6._GC-08-167-4-10
AACTACGGCCACAGACCCCCATCCTTCT
7._GC-01-121-6-18
AACTACGGCCACAGACCCCCATCCTTCT
8._GC-01-121-6-18
AACTACGGCCACAGACCCCCATCCTTCT
9._GC-01-121-6-18
AACTACGGCCACAGACCCCCATCCTTCT
10._GC-01-121-6-18
AACTACGGCCACAGACCCCCATCCTTCT
11._GC-01-121-6-18
AACTACGGCCACAGACCCCCATCCTTCT
12._GC-08-167-4-10
AACTACGGCCACAGACCCCCATCCTTCT
13._MO_20
_CT_____ACCC___TTCT
14._MO_20
AACT_____ACCC___TTCT
15._MO_20
AACT_____ACCC___TTCT
16._MO_20
AACT_____ACCC___TTCT
17._MO_20
AACT_____ACCC___TTCT
18._MO_20
AACT_____ACCC___TTCT
19._MO_20
AACT_____ACCC___TTCT
20._MO_20
AACT_____ACCC___TTCT
21._MO_20
AACT_____ACCC___TTCT
22._MO_20
AACT_____ACCC___TTCT
23._MO_20
AACT_____ACCC___TTCT
24._RUQ_1566
________GG____CT
25._MO_20
AATT_____AACC___CCTT
26._RUQ_1566
AA______ACCC__CC__
27._MO_20_Fld#_171_Plt#_1
_AGACGGCCAC_ACGGGGATCCAAAG
28._RUQ_1566
_AGACGGCCAC_ACGGGGATCCAAAG
29._MITC-000675
_AGACGGCCAC_ACGGGGATCCAAAG
30._MO_20_Fld#_74_Plt#_1
_AAACAAACAA_CCCCGGAACCAAAA
 858687888990919293     
_Input profile
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._MO_20
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
2._RUQ_1566
__GG---___X_XX_XX_XX_XX_X
3._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
4._GC-08-167-4-10
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
5._GC-08-167-4-10
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
6._GC-08-167-4-10
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
7._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
8._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
9._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
10._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
11._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
12._GC-08-167-4-10
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
13._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
14._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
15._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
16._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
17._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
18._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
19._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
20._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
21._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
22._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
23._MO_20
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
24._RUQ_1566
_________X_XX_XX_XX_XX_X
25._MO_20
CC_GG_CCTTCC__X_XX_XX_XX_XX_X
26._RUQ_1566
CT__CC_GT___X_XX_XX_XX_XX_X
27._MO_20_Fld#_171_Plt#_1
_AG__AGACAGATGGX_XX_XX_XX_XX_X
28._RUQ_1566
_AG__AGACAGATGGX_XX_XX_XX_XX_X
29._MITC-000675
_AG__AGACAGATGGX_XX_XX_XX_XX_X
30._MO_20_Fld#_74_Plt#_1
_AA__AGAAAAATGGX_XX_XX_XX_XX_X

Input profile: MO_20 GC-01-121-6-18

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

1._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._MO_20 RUQ_1566

68.2 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._MO_20 GC-01-121-6-18

55.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

4._MO_20 GC-08-167-4-10

54.9 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._MO_20 GC-08-167-4-10

54.9 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._MO_20 GC-08-167-4-10

54.8 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._MO_20 GC-01-121-6-18

54.8 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._MO_20 GC-01-121-6-18

54.8 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

9._MO_20 GC-01-121-6-18

54.8 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

10._MO_20 GC-01-121-6-18

54.8 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._MO_20 GC-01-121-6-18

54.8 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._MO_20 GC-08-167-4-10

54.8 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._MO_20

53.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

14._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

15._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

16._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

17._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

18._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

19._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

20._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

21._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

22._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._MO_20

51.3 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

24._MO_20 RUQ_1566

50 %
25 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

25._MO_20

47.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

26._MO_20 RUQ_1566

45.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._MO_20 MO_20_Fld#_171_Plt#_1

30.4 %
79 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

28._MO_20 RUQ_1566

30.1 %
78 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

29._MO_20 MITC-000675

30.1 %
78 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

30._MO_20 MO_20_Fld#_74_Plt#_1

29.7 %
79 shared markers

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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240