SNP Profiles of MO-20   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGAACTCTCTCTGGCTCTCT
1._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGGCTCTCT
2._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
3._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
4._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
5._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
6._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
7._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGGCTCTCT
8._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGG_CTCT
9._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGG_CTCT
10._MO_20
AAACCTCC____CTCTGG_CT_
11._MO_20
AAACCTCC____CTCTGG_CT_
12._MO_20
AAACCTCC____CTCTGG_CT_
13._MO_20
AAACCTCC____CTCTGG_CT_
14._MO_20
AAACCTCC____CTCTGG_CT_
15._MO_20
AAACCTCC____CTCTGG_CT_
16._MO_20
AAACCTCC____CTCTGG_CT_
17._MO_20
AAACCTCC____CTCTGG_CT_
18._MO_20
AAACCTCC____CTCTGG_CT_
19._MO_20
AAACCTCC____CTCTGG_CT_
20._MO_20
AAACCTCC____CTCTGG_CT_
21._RUQ_1566
___CC__TT_______
22._RUQ_1566
___CC____CT___CT_
23._RUQ_1566
__-CC__-_-__--_
24._GC-01-121-6-18
AA_CCACGGGGCTCCCCCCGGTTCCTT
25._MO_20_Fld#_171_Plt#_1
AAAC_CCGGAA_AGAG_GGAGAGAG
26._MO_20
AA_CCAC____CCCCGG_CC_
27._RUQ_1566
AAAC_CCGGAA_AGAG_GGAGAGAG
28._MITC-000675
AAAC_CCGGAA_AGAG_GGAGAGAG
29._MO_20
TTCCCCCC____CCCTAG_TT_
30._MO_20_Fld#_74_Plt#_1
AAAA_CCGGAG_GGAG_GGAAGGGG
 1516171819202122232425262728
_Input profile
AAACAAAGCGCGCGCCAGCTGGATAACG
1._GC-08-167-4-10
AAACAAAGCGCGCGCCAGCTGGATAACG
2._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
3._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
4._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
5._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
6._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
7._GC-08-167-4-10
AAACAAAGCGCGCGCCAGCTGGATAACG
8._GC-08-167-4-10
AAACAAAGCGCGCGCCAGCTGGATAACG
9._GC-08-167-4-10
AAACAAAGCGCGCGCCAGCTGGATAACG
10._MO_20
___AG__CG____ATAA_
11._MO_20
___AG__CG____ATAA_
12._MO_20
___AG__CG____ATAA_
13._MO_20
___AG__CG____ATAA_
14._MO_20
___AG__CG____ATAA_
15._MO_20
___AG__CG____ATAA_
16._MO_20
___AG__CG____ATAA_
17._MO_20
___AG__CG____ATAA_
18._MO_20
___AG__CG____ATAA_
19._MO_20
___AG__CG____ATAA_
20._MO_20
___AG__CG____ATAA_
21._RUQ_1566
___AGCT_________
22._RUQ_1566
__AA__CG_CC__GG_AACC
23._RUQ_1566
_____-____-_--
24._GC-01-121-6-18
AACC_GGGGCCGGTTAATTGGTTAACC
25._MO_20_Fld#_171_Plt#_1
TTACAAAGCG_CGGGAAAGGGATAACG
26._MO_20
___GG__GG____TTAA_
27._RUQ_1566
TTACAAAGCG_CGGGAAAGGGATAACG
28._MITC-000675
TTACAAAGCG_CGGGAAAGGGATAACG
29._MO_20
___GG__GG____AATT_
30._MO_20_Fld#_74_Plt#_1
ATCCGGAACC_GGAGGGAAAGATATCG
 2930313233343536373839404142
_Input profile
CGATTTGTAGCGCCAAGTGTTTAACTAG
1._GC-08-167-4-10
CGATTTGTAGCGCCAAGTGTTTAACTAG
2._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
3._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
4._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
5._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
6._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
7._GC-08-167-4-10
CGATTTGTAGCGCCAAGTGTTTAACTAG
8._GC-08-167-4-10
CGATTTGTAGCGCCAAGTGTTTAACTAG
9._GC-08-167-4-10
CGATTTGTAGCGCCAAGTGTTTAACTAG
10._MO_20
CGAT___CG_AAGT__AA__
11._MO_20
CGAT___CG_AAGT__AA__
12._MO_20
CGAT___CG_AAGT__AA__
13._MO_20
CGAT___CG_AAGT__AA__
14._MO_20
CGAT___CG_AAGT__AA__
15._MO_20
CGAT___CG_AAGT__AA__
16._MO_20
CGAT___CG_AAGT__AA__
17._MO_20
CGAT___CG_AAGT__AA__
18._MO_20
CGAT___CG_AAGT__AA__
19._MO_20
CGAT___CG_AAGT__AA__
20._MO_20
CGAT___CG_AAGT__AA__
21._RUQ_1566
CG____CG_AA____CT_
22._RUQ_1566
CG___AGCG____TT_CT_
23._RUQ_1566
-___GG-CC--__--_
24._GC-01-121-6-18
GGAATTTTGGCCCCGGTTGGGGGGCCGG
25._MO_20_Fld#_171_Plt#_1
CGATAAACAGCGCCAAACACAAAAAGAG
26._MO_20
GGAA___CC_GGTT__GG__
27._RUQ_1566
CGATAAACAGCGCCAAACACAAAAAGAG
28._MITC-000675
CGATAAACAGCGCCAAACACAAAAAGAG
29._MO_20
CCTT___GG_AAGG__GG__
30._MO_20_Fld#_74_Plt#_1
CCAAAGCCAGCCCCAGACCCACAAAGAA
 4344454647484950515253545556
_Input profile
CCGTATCTGGAGAGCTACAGAGGGTTCT
1._GC-08-167-4-10
CCGTATCTGGAGAGCTACAGAGGGTTCT
2._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
3._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
4._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
5._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
6._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
7._GC-08-167-4-10
CCGTATCTGGAGAGCTACAGAGGGTTCT
8._GC-08-167-4-10
CCGTATCTGGAGAGCTACAGAGGGTTCT
9._GC-08-167-4-10
CCGTATCTGGAGAGCTACAGAGGGTTCT
10._MO_20
___CT_________CT
11._MO_20
___CT_________CT
12._MO_20
___CT_________CT
13._MO_20
___CT_________CT
14._MO_20
___CT_________CT
15._MO_20
___CT_________CT
16._MO_20
___CT_________CT
17._MO_20
___CT_________CT
18._MO_20
___CT_________CT
19._MO_20
___CT_________CT
20._MO_20
___CT_________CT
21._RUQ_1566
_____AG________
22._RUQ_1566
__AT_GG________CT
23._RUQ_1566
_GG-__-______--
24._GC-01-121-6-18
CCGGTTTTAAGGAACCCCGGGGTTTTTT
25._MO_20_Fld#_171_Plt#_1
GGAC_AG_AGAGAG_AGAGCCAGAG
26._MO_20
___TT_________TT
27._RUQ_1566
GGAC_AG_AGAGAG_AGAGCCAGAG
28._MITC-000675
GGAC_AG_AGAGAG_AGAGCCAGAG
29._MO_20
___TT_________TT
30._MO_20_Fld#_74_Plt#_1
GGCC_GG_GGAAAG_GGGGACAAAG
 5758596061626364656667686970
_Input profile
CTTTAGCCTTACCGAGACAGGTGGAGTT
1._GC-08-167-4-10
CTTTAGCCTTACCGAGACAGGTGGAGTT
2._GC-01-121-6-18
CTTTAGCCTTACCGAGACAGGTGGAGTT
3._GC-01-121-6-18
CTTTAGCCTTACCGAGACAGGTGGAGTT
4._GC-01-121-6-18
CTTTAGCCTTACCGAGACAGGTGGAGTT
5._GC-01-121-6-18
CTTTAGCCTTACCGAGACAGGTGGAGTT
6._GC-01-121-6-18
CTTTAGCCTTACCGAGACAGGTGGAGTT
7._GC-08-167-4-10
CTTTAGCCTTACCGAGACAGGTGGAGTT
8._GC-08-167-4-10
CTTTAGCCTTACCGAGACAGGTGGAGTT
9._GC-08-167-4-10
CTTTAGCCTTACCGAGACAGGTGGAGTT
10._MO_20
CT__CCTTACCG_ACAGGTGG__
11._MO_20
CT__CCTTACCG_ACAGGTGG__
12._MO_20
CT__CCTTACCG_ACAGGTGG__
13._MO_20
CT__CCTTACCG_ACAGGTGG__
14._MO_20
CT__CCTTACCG_ACAGGTGG__
15._MO_20
CT__CCTTACCG_ACAGGTGG__
16._MO_20
CT__CCTTACCG_ACAGGTGG__
17._MO_20
CT__CCTTACCG_ACAGGTGG__
18._MO_20
CT__CCTTACCG_ACAGGTGG__
19._MO_20
CT__CCTTACCG_ACAGGTGG__
20._MO_20
CT__CCTTACCG_ACAGGTGG__
21._RUQ_1566
__AG_____ACAG_GGAG_
22._RUQ_1566
___GG_AC_AGCCAG____
23._RUQ_1566
_--CCTT-_---GG--_
24._GC-01-121-6-18
CCTTGGCCCCAAGGGGAAGGGGGGAACC
25._MO_20_Fld#_171_Plt#_1
AGAAAGGGAAACCGAGACAGACCCAG_
26._MO_20
CC__CCCCAAGG_AAGGGGGG__
27._RUQ_1566
AGAAAGGGAAACCGAG_AGACCCAG_
28._MITC-000675
AGAAAGGGAAACCGAG_AGACCCAG_
29._MO_20
CC__CCTTCCCC_CCAAGGGT__
30._MO_20_Fld#_74_Plt#_1
AGAAAGGGAGAAGGGGCCAAAACCGG_
 7172737475767778798081828384
_Input profile
CCCTACGGCCACAGACCCCCATCCTTCT
1._GC-08-167-4-10
CCCTACGGCCACAGACCCCCATCCTTCT
2._GC-01-121-6-18
CCCTACGGCCACAGACCCCCATCCTTCT
3._GC-01-121-6-18
CCCTACGGCCACAGACCCCCATCCTTCT
4._GC-01-121-6-18
CCCTACGGCCACAGACCCCCATCCTTCT
5._GC-01-121-6-18
CCCTACGGCCACAGACCCCCATCCTTCT
6._GC-01-121-6-18
CCCTACGGCCACAGACCCCCATCCTTCT
7._GC-08-167-4-10
CCCTACGGCCACAGACCCCCATCCTTCT
8._GC-08-167-4-10
CCCTACGGCCACAGACCCCCATCCTTCT
9._GC-08-167-4-10
CCCTACGGCCACAGACCCCCATCCTTCT
10._MO_20
_CT_____ACCC___TTCT
11._MO_20
_CT_____ACCC___TTCT
12._MO_20
_CT_____ACCC___TTCT
13._MO_20
_CT_____ACCC___TTCT
14._MO_20
_CT_____ACCC___TTCT
15._MO_20
_CT_____ACCC___TTCT
16._MO_20
_CT_____ACCC___TTCT
17._MO_20
_CT_____ACCC___TTCT
18._MO_20
_CT_____ACCC___TTCT
19._MO_20
_CT_____ACCC___TTCT
20._MO_20
_CT_____ACCC___TTCT
21._RUQ_1566
_______ACCC__CC__
22._RUQ_1566
CC_______GG____CT
23._RUQ_1566
_______AC-__CC-_
24._GC-01-121-6-18
CCCCAAAGCCCCGGAACGCCTTAACCCT
25._MO_20_Fld#_171_Plt#_1
_AGACGGCCAC_ACGGGGATCCAAAG
26._MO_20
_CC_____AACG___CCCT
27._RUQ_1566
_AGACGGCCAC_ACGGGGATCCAAAG
28._MITC-000675
_AGACGGCCAC_ACGGGGATCCAAAG
29._MO_20
_TT_____AACC___CCTT
30._MO_20_Fld#_74_Plt#_1
_AAACAAACAA_CCCCGGAACCAAAA
 858687888990919293     
_Input profile
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
1._GC-08-167-4-10
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
2._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
3._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
4._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
5._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
6._GC-01-121-6-18
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
7._GC-08-167-4-10
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
8._GC-08-167-4-10
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
9._GC-08-167-4-10
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
10._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
11._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
12._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
13._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
14._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
15._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
16._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
17._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
18._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
19._MO_20
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
20._MO_20
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
21._RUQ_1566
CT__CC_GT___X_XX_XX_XX_XX_X
22._RUQ_1566
_________X_XX_XX_XX_XX_X
23._RUQ_1566
__GG---___X_XX_XX_XX_XX_X
24._GC-01-121-6-18
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
25._MO_20_Fld#_171_Plt#_1
_AG__AGACAGATGGX_XX_XX_XX_XX_X
26._MO_20
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
27._RUQ_1566
_AG__AGACAGATGGX_XX_XX_XX_XX_X
28._MITC-000675
_AG__AGACAGATGGX_XX_XX_XX_XX_X
29._MO_20
CC_GG_CCTTCC__X_XX_XX_XX_XX_X
30._MO_20_Fld#_74_Plt#_1
_AA__AGAAAAATGGX_XX_XX_XX_XX_X

Input profile: MO_20 GC-01-121-6-18

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

1._MO_20 GC-08-167-4-10

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._MO_20 GC-01-121-6-18

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._MO_20 GC-01-121-6-18

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._MO_20 GC-01-121-6-18

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._MO_20 GC-01-121-6-18

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._MO_20 GC-01-121-6-18

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._MO_20 GC-08-167-4-10

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._MO_20 GC-08-167-4-10

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._MO_20 GC-08-167-4-10

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

11._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

12._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

13._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

14._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

15._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

16._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

17._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

18._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

19._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._MO_20

98.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

21._MO_20 RUQ_1566

92.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._MO_20 RUQ_1566

88 %
25 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

23._MO_20 RUQ_1566

80 %
10 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._MO_20 GC-01-121-6-18

55.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._MO_20 MO_20_Fld#_171_Plt#_1

54.4 %
80 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

26._MO_20

53.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

27._MO_20 RUQ_1566

53.8 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

28._MO_20 MITC-000675

53.8 %
79 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

29._MO_20

52.6 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

30._MO_20 MO_20_Fld#_74_Plt#_1

36.9 %
80 shared markers

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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240