SNP Profiles of MO-20   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGAACTCTCTCTGGCTCTCT
1._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGGCTCTCT
2._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
3._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
4._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
5._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
6._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGGCTCTCT
7._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGG_CTCT
8._GC-08-167-4-10
AAACCTCCGGAACTCTCTCTGG_CTCT
9._GC-01-121-6-18
AAACCTCCGGAACTCTCTCTGGCTCTCT
10._MO_20
AAACCTCC____CTCTGG_CT_
11._MO_20
AAACCTCC____CTCTGG_CT_
12._MO_20
AAACCTCC____CTCTGG_CT_
13._MO_20
AAACCTCC____CTCTGG_CT_
14._MO_20
AAACCTCC____CTCTGG_CT_
15._MO_20
AAACCTCC____CTCTGG_CT_
16._MO_20
AAACCTCC____CTCTGG_CT_
17._MO_20
AAACCTCC____CTCTGG_CT_
18._MO_20
AAACCTCC____CTCTGG_CT_
19._MO_20
AAACCTCC____CTCTGG_CT_
20._MO_20
AAACCTCC____CTCTGG_CT_
21._RUQ_1566
___CC__TT_______
22._RUQ_1566
___CC____CT___CT_
23._RUQ_1566
__-CC__-_-__--_
24._GC-01-121-6-18
AA_CCACGGGGCTCCCCCCGGTTCCTT
25._MO_20
TTCCCCCC____CCCTAG_TT_
26._MO_20_Fld#_171_Plt#_1
AAAC_CCGGAA_AGAG_GGAGAGAG
27._RUQ_1566
AAAC_CCGGAA_AGAG_GGAGAGAG
28._MITC-000675
AAAC_CCGGAA_AGAG_GGAGAGAG
29._MO_20
AA_CCAC____CCCCGG_CC_
30._MO_20_Fld#_74_Plt#_1
AAAA_CCGGAG_GGAG_GGAAGGGG
 1516171819202122232425262728
_Input profile
AAACAAAGCGCGCGCCAGCTGGATAACG
1._GC-08-167-4-10
AAACAAAGCGCGCGCCAGCTGGATAACG
2._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
3._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
4._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
5._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
6._GC-08-167-4-10
AAACAAAGCGCGCGCCAGCTGGATAACG
7._GC-08-167-4-10
AAACAAAGCGCGCGCCAGCTGGATAACG
8._GC-08-167-4-10
AAACAAAGCGCGCGCCAGCTGGATAACG
9._GC-01-121-6-18
AAACAAAGCGCGCGCCAGCTGGATAACG
10._MO_20
___AG__CG____ATAA_
11._MO_20
___AG__CG____ATAA_
12._MO_20
___AG__CG____ATAA_
13._MO_20
___AG__CG____ATAA_
14._MO_20
___AG__CG____ATAA_
15._MO_20
___AG__CG____ATAA_
16._MO_20
___AG__CG____ATAA_
17._MO_20
___AG__CG____ATAA_
18._MO_20
___AG__CG____ATAA_
19._MO_20
___AG__CG____ATAA_
20._MO_20
___AG__CG____ATAA_
21._RUQ_1566
___AGCT_________
22._RUQ_1566
__AA__CG_CC__GG_AACC
23._RUQ_1566
_____-____-_--
24._GC-01-121-6-18
AACC_GGGGCCGGTTAATTGGTTAACC
25._MO_20
___GG__GG____AATT_
26._MO_20_Fld#_171_Plt#_1
TTACAAAGCG_CGGGAAAGGGATAACG
27._RUQ_1566
TTACAAAGCG_CGGGAAAGGGATAACG
28._MITC-000675
TTACAAAGCG_CGGGAAAGGGATAACG
29._MO_20
___GG__GG____TTAA_
30._MO_20_Fld#_74_Plt#_1
ATCCGGAACC_GGAGGGAAAGATATCG
 2930313233343536373839404142
_Input profile
CGATTTGTAGCGCCAAGTGTTTAACTAG
1._GC-08-167-4-10
CGATTTGTAGCGCCAAGTGTTTAACTAG
2._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
3._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
4._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
5._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
6._GC-08-167-4-10
CGATTTGTAGCGCCAAGTGTTTAACTAG
7._GC-08-167-4-10
CGATTTGTAGCGCCAAGTGTTTAACTAG
8._GC-08-167-4-10
CGATTTGTAGCGCCAAGTGTTTAACTAG
9._GC-01-121-6-18
CGATTTGTAGCGCCAAGTGTTTAACTAG
10._MO_20
CGAT___CG_AAGT__AA__
11._MO_20
CGAT___CG_AAGT__AA__
12._MO_20
CGAT___CG_AAGT__AA__
13._MO_20
CGAT___CG_AAGT__AA__
14._MO_20
CGAT___CG_AAGT__AA__
15._MO_20
CGAT___CG_AAGT__AA__
16._MO_20
CGAT___CG_AAGT__AA__
17._MO_20
CGAT___CG_AAGT__AA__
18._MO_20
CGAT___CG_AAGT__AA__
19._MO_20
CGAT___CG_AAGT__AA__
20._MO_20
CGAT___CG_AAGT__AA__
21._RUQ_1566
CG____CG_AA____CT_
22._RUQ_1566
CG___AGCG____TT_CT_
23._RUQ_1566
-___GG-CC--__--_
24._GC-01-121-6-18
GGAATTTTGGCCCCGGTTGGGGGGCCGG
25._MO_20
CCTT___GG_AAGG__GG__
26._MO_20_Fld#_171_Plt#_1
CGATAAACAGCGCCAAACACAAAAAGAG
27._RUQ_1566
CGATAAACAGCGCCAAACACAAAAAGAG
28._MITC-000675
CGATAAACAGCGCCAAACACAAAAAGAG
29._MO_20
GGAA___CC_GGTT__GG__
30._MO_20_Fld#_74_Plt#_1
CCAAAGCCAGCCCCAGACCCACAAAGAA
 4344454647484950515253545556
_Input profile
CCGTATCTGGAGAGCTACAGAGGGTTCT
1._GC-08-167-4-10
CCGTATCTGGAGAGCTACAGAGGGTTCT
2._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
3._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
4._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
5._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
6._GC-08-167-4-10
CCGTATCTGGAGAGCTACAGAGGGTTCT
7._GC-08-167-4-10
CCGTATCTGGAGAGCTACAGAGGGTTCT
8._GC-08-167-4-10
CCGTATCTGGAGAGCTACAGAGGGTTCT
9._GC-01-121-6-18
CCGTATCTGGAGAGCTACAGAGGGTTCT
10._MO_20
___CT_________CT
11._MO_20
___CT_________CT
12._MO_20
___CT_________CT
13._MO_20
___CT_________CT
14._MO_20
___CT_________CT
15._MO_20
___CT_________CT
16._MO_20
___CT_________CT
17._MO_20
___CT_________CT
18._MO_20
___CT_________CT
19._MO_20
___CT_________CT
20._MO_20
___CT_________CT
21._RUQ_1566
_____AG________
22._RUQ_1566
__AT_GG________CT
23._RUQ_1566
_GG-__-______--
24._GC-01-121-6-18
CCGGTTTTAAGGAACCCCGGGGTTTTTT
25._MO_20
___TT_________TT
26._MO_20_Fld#_171_Plt#_1
GGAC_AG_AGAGAG_AGAGCCAGAG
27._RUQ_1566
GGAC_AG_AGAGAG_AGAGCCAGAG
28._MITC-000675
GGAC_AG_AGAGAG_AGAGCCAGAG
29._MO_20
___TT_________TT
30._MO_20_Fld#_74_Plt#_1
GGCC_GG_GGAAAG_GGGGACAAAG
 5758596061626364656667686970
_Input profile
CTTTAGCCCTTTACCGAGACAGGTGGAG
1._GC-08-167-4-10
CTTTAGCCCTTTACCGAGACAGGTGGAG
2._GC-01-121-6-18
CTTTAGCCCTTTACCGAGACAGGTGGAG
3._GC-01-121-6-18
CTTTAGCCCTTTACCGAGACAGGTGGAG
4._GC-01-121-6-18
CTTTAGCCCTTTACCGAGACAGGTGGAG
5._GC-01-121-6-18
CTTTAGCCCTTTACCGAGACAGGTGGAG
6._GC-08-167-4-10
CTTTAGCCCTTTACCGAGACAGGTGGAG
7._GC-08-167-4-10
CTTTAGCCCTTTACCGAGACAGGTGGAG
8._GC-08-167-4-10
CTTTAGCCCTTTACCGAGACAGGTGGAG
9._GC-01-121-6-18
CTTTAGCC_TTACCGAGACAGGTGGAG
10._MO_20
CT__CC_TTACCG_ACAGGTGG_
11._MO_20
CT__CC_TTACCG_ACAGGTGG_
12._MO_20
CT__CC_TTACCG_ACAGGTGG_
13._MO_20
CT__CC_TTACCG_ACAGGTGG_
14._MO_20
CT__CC_TTACCG_ACAGGTGG_
15._MO_20
CT__CC_TTACCG_ACAGGTGG_
16._MO_20
CT__CC_TTACCG_ACAGGTGG_
17._MO_20
CT__CC_TTACCG_ACAGGTGG_
18._MO_20
CT__CC_TTACCG_ACAGGTGG_
19._MO_20
CT__CC_TTACCG_ACAGGTGG_
20._MO_20
CT__CC_TTACCG_ACAGGTGG_
21._RUQ_1566
__AG______ACAG_GGAG
22._RUQ_1566
___GGCT_AC_AGCCAG___
23._RUQ_1566
_--CCCCTT-_---GG--
24._GC-01-121-6-18
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
25._MO_20
CC__CC_TTCCCC_CCAAGGGT_
26._MO_20_Fld#_171_Plt#_1
AGAAAGGGAGAAACCGAGACAGACCCAG
27._RUQ_1566
AGAAAGGGAGAAACCGAG_AGACCCAG
28._MITC-000675
AGAAAGGGAGAAACCGAG_AGACCCAG
29._MO_20
CC__CC_CCAAGG_AAGGGGGG_
30._MO_20_Fld#_74_Plt#_1
AGAAAGGGAGAGAAGGGGCCAAAACCGG
 7172737475767778798081828384
_Input profile
TTCCAACTACGGCCACAGACCCCCATCC
1._GC-08-167-4-10
TTCCAACTACGGCCACAGACCCCCATCC
2._GC-01-121-6-18
TTCCAACTACGGCCACAGACCCCCATCC
3._GC-01-121-6-18
TTCCAACTACGGCCACAGACCCCCATCC
4._GC-01-121-6-18
TTCCAACTACGGCCACAGACCCCCATCC
5._GC-01-121-6-18
TTCCAACTACGGCCACAGACCCCCATCC
6._GC-08-167-4-10
TTCCAACTACGGCCACAGACCCCCATCC
7._GC-08-167-4-10
TTCCAACTACGGCCACAGACCCCCATCC
8._GC-08-167-4-10
TTCCAACTACGGCCACAGACCCCCATCC
9._GC-01-121-6-18
TTCC_CTACGGCCACAGACCCCCATCC
10._MO_20
__AACT_____ACCC___
11._MO_20
__AACT_____ACCC___
12._MO_20
__AACT_____ACCC___
13._MO_20
__AACT_____ACCC___
14._MO_20
__AACT_____ACCC___
15._MO_20
__AACT_____ACCC___
16._MO_20
__AACT_____ACCC___
17._MO_20
__AACT_____ACCC___
18._MO_20
__AACT_____ACCC___
19._MO_20
___CT_____ACCC___
20._MO_20
__AACT_____ACCC___
21._RUQ_1566
__AA______ACCC__CC
22._RUQ_1566
_CC________GG___
23._RUQ_1566
_________AC-__CC
24._GC-01-121-6-18
CCCCGGCCAAAGCCCCGGAACGCCTTAA
25._MO_20
__AATT_____AACC___
26._MO_20_Fld#_171_Plt#_1
___AGACGGCCAC_ACGGGGATCC
27._RUQ_1566
___AGACGGCCAC_ACGGGGATCC
28._MITC-000675
___AGACGGCCAC_ACGGGGATCC
29._MO_20
__GGCC_____AACG___
30._MO_20_Fld#_74_Plt#_1
___AAACAAACAA_CCCCGGAACC
 8586878889909192939495   
_Input profile
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
1._GC-08-167-4-10
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
2._GC-01-121-6-18
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
3._GC-01-121-6-18
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
4._GC-01-121-6-18
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
5._GC-01-121-6-18
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
6._GC-08-167-4-10
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
7._GC-08-167-4-10
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
8._GC-08-167-4-10
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
9._GC-01-121-6-18
TTCTCTCTAGCCCTGTCTATGGX_XX_XX_X
10._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
11._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
12._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
13._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
14._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
15._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
16._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
17._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
18._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
19._MO_20
TTCTCT_AG_CTGTCT__X_XX_XX_X
20._MO_20
TTCTTT_AG_CTGTCT__X_XX_XX_X
21._RUQ_1566
__CT__CC_GT___X_XX_XX_X
22._RUQ_1566
_CT_________X_XX_XX_X
23._RUQ_1566
-___GG---___X_XX_XX_X
24._GC-01-121-6-18
CCCTCCCCAGCCCCTTTTAAGGX_XX_XX_X
25._MO_20
CCTTCC_GG_CCTTCC__X_XX_XX_X
26._MO_20_Fld#_171_Plt#_1
AAAG_AG__AGACAGATGGX_XX_XX_X
27._RUQ_1566
AAAG_AG__AGACAGATGGX_XX_XX_X
28._MITC-000675
AAAG_AG__AGACAGATGGX_XX_XX_X
29._MO_20
CCCTCC_AG_CCTTTT__X_XX_XX_X
30._MO_20_Fld#_74_Plt#_1
AAAA_AA__AGAAAAATGGX_XX_XX_X

Input profile: MO_20 GC-01-121-6-18

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

1._MO_20 GC-08-167-4-10

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._MO_20 GC-01-121-6-18

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._MO_20 GC-01-121-6-18

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._MO_20 GC-01-121-6-18

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._MO_20 GC-01-121-6-18

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._MO_20 GC-08-167-4-10

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._MO_20 GC-08-167-4-10

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._MO_20 GC-08-167-4-10

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._MO_20 GC-01-121-6-18

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

10._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

11._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

12._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

13._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

14._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

15._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

16._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

17._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

18._MO_20

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

20._MO_20

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

21._MO_20 RUQ_1566

92.9 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._MO_20 RUQ_1566

88.5 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

23._MO_20 RUQ_1566

77.3 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._MO_20 GC-01-121-6-18

54.8 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._MO_20

53.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

26._MO_20 MO_20_Fld#_171_Plt#_1

53.7 %
81 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

27._MO_20 RUQ_1566

53.1 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

28._MO_20 MITC-000675

53.1 %
80 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

29._MO_20

52.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._MO_20 MO_20_Fld#_74_Plt#_1

36.4 %
81 shared markers

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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240