SNP Profiles of UF-712 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	AA	AA	TT	TT	CC	CC	AA	TT	TT	TT	TT
1._GC-01-089-5-06	TT	CC	CC	AA	AA	TT	TT	CC	CC	AA	TT	TT	TT	TT
2._GC-01-089-5-06	TT	CC	CC	AA	AA	TT	TT	CC	CC	AA	TT	TT	TT	TT
3._GC-01-089-5-06	TT	CC	CC	AA	AA	TT	TT	CC	CC	AA	TT	TT	TT	TT
4._RUQ_1683	_	CC	CC	_	_	TT	_	CC	_	_	TT	TT	_	_
5._RUQ_1638	_	CC	CC	_	_	TT	_	CC	_	_	TT	TT	_	_
6._UF_712	TT	CC	CC	_	_	_	_	CC	CC	AA	_	TT	_	_
7._UF_712	TT	CC	CC	_	_	_	_	CC	CC	AA	_	TT	_	_
8._UF_712	TT	CC	CC	_	_	_	_	CC	CC	AA	_	TT	_	_
9._UF_712	TT	CC	CC	_	_	_	_	CC	CC	AA	_	TT	_	_
10._RUQ_1638	AT	CC	CC	_	_	_	_	CC	CC	AA	_	TT	_	_
11._RUQ_1638	AT	CC	CC	_	_	_	_	CC	CC	AA	_	TT	_	_
12._UF_712	AT	CC	CC	_	_	_	_	CC	CC	AA	_	TT	_	_
13._RUQ_1683	_	_	_	_	_	TT	_	_	_	_	_	_	_	_
14._UF_712	AT	CC	TT	_	_	_	_	CC	CC	AA	_	TT	_	_
15._RUQ_1683	AT	_	CC	AA	AA	_	AA	GG	_	AA	AA	AA	AA	AA
16._MITC-000350	AT	_	CC	AA	AA	_	AA	GG	_	AA	AA	AA	AA	AA
17._MITC-000039	AT	_	CC	AA	AA	_	AA	GG	_	AA	AA	AA	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	CC	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
1._GC-01-089-5-06	AA	AA	GG	CC	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
2._GC-01-089-5-06	AA	AA	GG	CC	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
3._GC-01-089-5-06	AA	AA	GG	CC	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
4._RUQ_1683	_	_	_	_	GG	_	_	_	_	GG	_	TT	CC	GG
5._RUQ_1638	_	_	_	_	GG	_	_	_	_	GG	_	TT	CC	GG
6._UF_712	_	_	GG	_	_	GG	_	_	_	_	AA	TT	_	GG
7._UF_712	_	_	GG	_	_	GG	_	_	_	_	AA	TT	_	GG
8._UF_712	_	_	GG	_	_	GG	_	_	_	_	AA	TT	_	GG
9._UF_712	_	_	GG	_	_	GG	_	_	_	_	AA	TT	_	GG
10._RUQ_1638	_	_	GG	_	_	GG	_	_	_	_	AA	TT	_	GG
11._RUQ_1638	_	_	GG	_	_	GG	_	_	_	_	AA	TT	_	GG
12._UF_712	_	_	GG	_	_	_	_	_	_	_	AA	TT	_	GG
13._RUQ_1683	_	_	GG	CC	_	_	_	_	_	_	_	_	_	GG
14._UF_712	_	_	GG	_	_	_	_	_	_	_	AA	TT	_	GG
15._RUQ_1683	AA	AA	GG	GG	_	GG	GG	AA	GG	GG	AA	TT	GG	CC
16._MITC-000350	AA	AA	GG	GG	_	GG	GG	AA	GG	GG	AA	TT	GG	CC
17._MITC-000039	AA	AA	GG	GG	_	GG	GG	AA	GG	GG	AA	TT	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	TT	TT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	GG
1._GC-01-089-5-06	TT	TT	TT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	GG
2._GC-01-089-5-06	TT	TT	TT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	GG
3._GC-01-089-5-06	TT	TT	TT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	GG
4._RUQ_1683	_	_	_	GG	GG	CC	AA	GG	_	_	GG	CC	_	_
5._RUQ_1638	_	_	_	GG	GG	CC	AA	GG	_	_	GG	CC	_	_
6._UF_712	TT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
7._UF_712	TT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
8._UF_712	TT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
9._UF_712	TT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
10._RUQ_1638	TT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
11._RUQ_1638	TT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
12._UF_712	TT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
13._RUQ_1683	_	_	_	_	GG	_	AA	_	_	_	_	CC	_	_
14._UF_712	TT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
15._RUQ_1683	TT	AA	AA	GG	GG	CC	AA	CC	CC	AA	GG	GG	GG	CC
16._MITC-000350	TT	AA	AA	GG	GG	CC	AA	CC	CC	AA	GG	GG	GG	CC
17._MITC-000039	TT	AA	AA	GG	GG	CC	AA	CC	CC	AA	GG	GG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	GG	AA	AA	CC	AA	GG	AA	TT	TT	CC	TT
1._GC-01-089-5-06	GG	TT	TT	GG	AA	AA	CC	AA	GG	AA	TT	TT	CC	TT
2._GC-01-089-5-06	GG	TT	TT	GG	AA	AA	CC	AA	GG	AA	TT	TT	CC	TT
3._GC-01-089-5-06	GG	TT	TT	GG	AA	AA	CC	AA	GG	AA	TT	TT	CC	TT
4._RUQ_1683	GG	TT	_	_	AA	_	_	_	_	_	_	TT	_	TT
5._RUQ_1638	GG	TT	_	_	AA	_	_	_	_	_	_	TT	_	TT
6._UF_712	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
7._UF_712	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
8._UF_712	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
9._UF_712	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
10._RUQ_1638	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
11._RUQ_1638	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
12._UF_712	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
13._RUQ_1683	_	_	_	_	AA	_	_	_	_	_	_	_	_	_
14._UF_712	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
15._RUQ_1683	CC	_	AA	_	AA	AA	GG	_	GG	AA	AA	AA	GG	AA
16._MITC-000350	CC	_	AA	_	AA	AA	GG	_	GG	AA	AA	AA	GG	AA
17._MITC-000039	CC	_	AA	_	AA	AA	GG	_	GG	AA	AA	AA	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CC	TT	CC	CC	GG	CC	AA	GG	GG	AA	TT	CC
1._GC-01-089-5-06	GG	CC	CC	TT	CC	CC	GG	CC	AA	GG	GG	AA	TT	CC
2._GC-01-089-5-06	GG	CC	CC	TT	CC	CC	GG	CC	AA	GG	GG	AA	TT	CC
3._GC-01-089-5-06	GG	CC	CC	TT	CC	CC	GG	CC	AA	GG	GG	AA	TT	CC
4._RUQ_1683	-	CC	CC	TT	CC	_	GG	CC	AA	GG	GG	AA	_	_
5._RUQ_1638	-	CC	CC	TT	CC	_	GG	CC	AA	GG	GG	AA	_	_
6._UF_712	_	CC	_	TT	CC	CC	_	CC	AA	GG	GG	_	_	_
7._UF_712	_	CC	_	TT	CC	CC	_	CC	AA	GG	GG	_	_	_
8._UF_712	_	CC	_	TT	CC	CC	_	CC	AA	GG	GG	_	_	_
9._UF_712	_	CC	_	TT	CC	CC	_	CC	AA	GG	GG	_	_	_
10._RUQ_1638	_	CC	_	TT	CC	CC	_	CC	AA	GG	GG	_	_	_
11._RUQ_1638	_	CC	_	TT	CC	CC	_	CC	AA	GG	GG	_	_	_
12._UF_712	_	CC	_	TT	CC	CC	_	CC	AA	GG	GG	_	_	_
13._RUQ_1683	GG	_	_	_	_	_	_	CC	AA	_	GG	AA	_	_
14._UF_712	_	CC	_	TT	CC	CC	_	CC	_	GG	GG	_	_	_
15._RUQ_1683	GG	GG	GG	AA	CC	CC	GG	CC	AA	CC	CC	AA	_	_
16._MITC-000350	GG	GG	GG	AA	CC	CC	GG	CC	AA	CC	CC	AA	_	_
17._MITC-000039	GG	GG	GG	AA	CC	CC	GG	CC	AA	CC	CC	AA	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	CC	CC	GG	AA	AA	AA	AA	CC	CC	AA	CC	CT	TT
1._GC-01-089-5-06	AA	CC	CC	GG	AA	AA	AA	AA	CC	CC	AA	CC	CT	TT
2._GC-01-089-5-06	AA	CC	CC	GG	AA	AA	AA	AA	CC	CC	AA	CC	CT	TT
3._GC-01-089-5-06	AA	CC	CC	GG	AA	AA	AA	AA	_	CC	AA	CC	CT	TT
4._RUQ_1683	_	_	_	_	_	_	_	AA	CC	_	_	CC	CT	_
5._RUQ_1638	_	_	_	_	_	_	_	AA	CC	_	_	CC	CT	_
6._UF_712	AA	CC	_	_	_	_	_	AA	CC	_	_	_	CT	TT
7._UF_712	AA	CC	_	_	_	_	_	AA	CC	_	_	_	CT	TT
8._UF_712	AA	CC	_	_	_	_	_	AA	CC	_	_	_	CT	TT
9._UF_712	AA	CC	_	_	_	_	_	AA	_	_	_	_	CT	TT
10._RUQ_1638	GG	CC	_	_	_	_	_	AA	CC	_	_	_	CT	TT
11._RUQ_1638	GG	CC	_	_	_	_	_	AA	CC	_	_	_	CT	TT
12._UF_712	GG	CC	_	_	_	_	_	AA	CC	_	_	_	CT	TT
13._RUQ_1683	GG	_	_	_	_	_	_	AA	CC	_	_	CC	_	_
14._UF_712	GG	CC	_	_	_	_	_	AA	CC	_	_	_	CT	TT
15._RUQ_1683	_	GG	CC	GG	AA	AA	_	AA	GG	GG	AA	CC	AG	AA
16._MITC-000350	_	GG	CC	GG	AA	AA	_	AA	GG	GG	AA	CC	AG	AA
17._MITC-000039	_	GG	CC	GG	AA	AA	_	AA	GG	GG	AA	CC	AG	AA

	85	86	87	88	89	90	91	92	93
_Input profile	CC	TT	GG	CC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
1._GC-01-089-5-06	CC	TT	GG	CC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
2._GC-01-089-5-06	CC	TT	GG	CC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
3._GC-01-089-5-06	CC	TT	GG	CC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
4._RUQ_1683	_	_	GG	CC	CC	GG	_	_	_	X_X	X_X	X_X	X_X	X_X
5._RUQ_1638	_	_	GG	CC	CC	GG	_	_	_	X_X	X_X	X_X	X_X	X_X
6._UF_712	CC	_	GG	_	CC	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
7._UF_712	CC	_	GG	_	CC	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
8._UF_712	CC	_	GG	_	CC	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
9._UF_712	CC	_	GG	_	CC	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
10._RUQ_1638	CC	_	GG	_	CC	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
11._RUQ_1638	CC	_	GG	_	CC	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
12._UF_712	CC	_	GG	_	CC	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
13._RUQ_1683	CC	_	_	CC	_	GG	_	_	_	X_X	X_X	X_X	X_X	X_X
14._UF_712	CC	_	GG	_	CC	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X
15._RUQ_1683	_	AA	_	_	GG	CC	GG	TT	GG	X_X	X_X	X_X	X_X	X_X
16._MITC-000350	_	AA	_	_	GG	CC	GG	TT	GG	X_X	X_X	X_X	X_X	X_X
17._MITC-000039	_	AA	_	_	GG	CC	GG	TT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: UF_712 GC-01-089-5-06

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

1._UF_712 GC-01-089-5-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._UF_712 GC-01-089-5-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._UF_712 GC-01-089-5-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._UF_712 RUQ_1683

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._UF_712 RUQ_1638

identical
41 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._UF_712

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._UF_712

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

8._UF_712

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

9._UF_712

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

10._UF_712 RUQ_1638

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._UF_712 RUQ_1638

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._UF_712

96.1 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

13._UF_712 RUQ_1683

95 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

14._UF_712

93.2 %
37 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

48.7 %
79 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_712 MITC-000350

48.7 %
79 shared markers

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USDA-SHRS, United States of America

17._UF_712 MITC-000039

48.7 %
79 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240