SNP Profiles of "UF 712"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-089-5-06
______CCGGAA___AA______CCTTCCTT___
2. _GC-01-089-5-06
______CCGGAA___AA______CCTTCCTT___
3. _GC-01-089-5-06
______CCGGAA___AA______CCTTCCTT___
4. _GC-01-089-5-06
______CCGGAA___AA______CCTTCCTT___
5. _1506_1
______CC___AA___________________________
6. _1506_2
______CC___AA___________________________
7. _1506_3
______CC___AA___________________________
8. _1506_4
______CC___AA___________________________
9. _Cabiria
______CC___AA___________________________
10. _La_Montaña_Lot_6_Row_39_34_36
______CC___AA___________________________
11. _RUQ_1683
CTAA_________TT___CCGG____________TT
12. _RUQ_1683
______CCCCAA___AA______GGAACCAA___
13. _RUQ_1683
______________________________TTCC______
14. _RUQ_1638
______________________________TTCC______
15. _RUQ_1638
______CC___AA___________________________
16. _RUQ_1638
______CC___AA___________________________
17. _MITC-000350
______CCCCAA___AA______GGAACCAA___
18. _MITC-000039
______CCCCAA___AA______GGAACCAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-089-5-06
___CCGGTTAAGG______CC___CCAAGGCC
2. _GC-01-089-5-06
___CCGGTTAAGG______CC___CCAAGGCC
3. _GC-01-089-5-06
___CCGGTTAAGG______CC___CCAAGGCC
4. _GC-01-089-5-06
___CCGGTTAAGG______CC___CCAAGGCC
5. _1506_1
___CCGGTT____________CC___CCAA___CC
6. _1506_2
___CCGGTT____________CC___CCAA___CC
7. _1506_3
___CCGGTT____________CC___CCAA___CC
8. _1506_4
___CCGGTT____________CC___CCAA___CC
9. _Cabiria
___CCGGTT____________CC___CCAA___CC
10. _La_Montaña_Lot_6_Row_39_34_36
___CCGGTT____________CC___CC______CC
11. _RUQ_1683
AACC____________TTAA___GG___AA______
12. _RUQ_1683
___CCCCAATTGG______CC___GGAAGGGG
13. _RUQ_1683
___CCGGTT___GG______CC___CCAA___CC
14. _RUQ_1638
___CCGGTT___GG______CC___CCAA___CC
15. _RUQ_1638
___CCGGTT____________CC___CCAA___CC
16. _RUQ_1638
___CCGGTT____________CC___CCAA___CC
17. _MITC-000350
___CCCCAATTGG______CC___GGAAGGGG
18. _MITC-000039
___CCCCAATTGG______CC___GGAAGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-089-5-06
______TTAA___GGTTCCAA___AAAACCGG
2. _GC-01-089-5-06
______TTAA___GGTTCCAA___AAAACCGG
3. _GC-01-089-5-06
______TTAA___GGTTCCAA___AAAACCGG
4. _GC-01-089-5-06
______TTAA___GGTTCCAA___AAAACCGG
5. _1506_1
__________________TT_________AA______GG
6. _1506_2
__________________TT_________AA______GG
7. _1506_3
__________________TT_________AA______GG
8. _1506_4
__________________TT_________AA______GG
9. _Cabiria
__________________TT_________AA______GG
10. _La_Montaña_Lot_6_Row_39_34_36
__________________TT_________AA______GG
11. _RUQ_1683
CCAA___AAAC____________CC____________
12. _RUQ_1683
______AAAA___GGTTGGAA___AAAAGG___
13. _RUQ_1683
_________AA___GGTT_______________CCGG
14. _RUQ_1638
_________AA___GGTT_______________CCGG
15. _RUQ_1638
__________________TT_________AA______GG
16. _RUQ_1638
__________________TT_________AA______GG
17. _MITC-000350
______AAAA___GGTTGGAA___AAAAGG___
18. _MITC-000039
______AAAA___GGTTGGAA___AAAAGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-089-5-06
______AA___AACC___AAGGGGGG___CCCC
2. _GC-01-089-5-06
______AA___AACC___AAGGGGGG___CCCC
3. _GC-01-089-5-06
______AA___AACC___AAGGGGGG___CCCC
4. _GC-01-089-5-06
______AA___AACC___AAGGGGGG___CCCC
5. _1506_1
____________AACC______GG___GG___CC___
6. _1506_2
____________AACC______GG___GG___CC___
7. _1506_3
____________AACC______GG___GG___CC___
8. _1506_4
____________AACC______GG___GG___CC___
9. _Cabiria
____________AACC______GG___GG___CC___
10. _La_Montaña_Lot_6_Row_39_34_36
____________AACC______GG___GG___TT___
11. _RUQ_1683
___AA___CCAA___AA_________GGAA___CC
12. _RUQ_1683
GG___AA___AA______AACCGGGG___CCGG
13. _RUQ_1683
____________AACC______GG___GG___CCCC
14. _RUQ_1638
____________AACC______GG___GG___CCCC
15. _RUQ_1638
____________AACC______GG___GG___CC___
16. _RUQ_1638
____________AACC______GG___GG___CC___
17. _MITC-000350
GG___AA___AA______AACCGGGG___CCGG
18. _MITC-000039
GG___AA___AA______AACCGGGG___CCGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-089-5-06
GGCT_________AAAA___AATTTTGGAA___
2. _GC-01-089-5-06
GGCT_________AAAA___AATTTTGGAA___
3. _GC-01-089-5-06
GGCT_________AAAA___AATTTTGGAA___
4. _GC-01-089-5-06
GGCT_________AAAA___AATTTTGGAA___
5. _1506_1
___CT_________AA_______________GG______
6. _1506_2
___CT_________AA_______________GG______
7. _1506_3
___CT_________AA_______________GG______
8. _1506_4
___CT_________AA_______________GG______
9. _Cabiria
___CT_________GG_______________GG______
10. _La_Montaña_Lot_6_Row_39_34_36
___CT_________GG_______________GG______
11. _RUQ_1683
______TTAACCGG___CC______TTGGAACC
12. _RUQ_1683
___AG____________AA___AA______CCAA___
13. _RUQ_1683
___CT________________________TTGGAA___
14. _RUQ_1638
___CT________________________TTGGAA___
15. _RUQ_1638
___CT_________GG_______________GG______
16. _RUQ_1638
___CT_________GG_______________GG______
17. _MITC-000350
___AG____________AA___AA______CCAA___
18. _MITC-000039
___AG____________AA___AA______CCAA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-089-5-06
TTTTTT___CC___CCAAGGGGTTGGGGCC
2. _GC-01-089-5-06
TTTTTT___CC___CCAAGGGGTTGGGGCC
3. _GC-01-089-5-06
TTTTTT___CC___CCAAGGGGTTGGGGCC
4. _GC-01-089-5-06
TTTTTT___CC___CCAAGGGGTTGGGGCC
5. _1506_1
________________________GG___TT______CC
6. _1506_2
________________________GG___TT______CC
7. _1506_3
________________________GG___TT______CC
8. _1506_4
________________________GG___TT______CC
9. _Cabiria
________________________GG___TT______CC
10. _La_Montaña_Lot_6_Row_39_34_36
________________________GG___TT______CC
11. _RUQ_1683
_________TTCCAACC___GG_________GG___
12. _RUQ_1683
AAAAAA___CC___GGAACC___AACCGGGG
13. _RUQ_1683
______TT___CC_________GGGGTT___-___
14. _RUQ_1638
______TT___CC_________GGGGTT___-___
15. _RUQ_1638
________________________GG___TT______CC
16. _RUQ_1638
________________________GG___TT______CC
17. _MITC-000350
AAAAAA___CC___GGAACC___AACCGGGG
18. _MITC-000039
AAAAAA___CC___GGAACC___AACCGGGG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-089-5-06
GGCC___TTTTAACC______TTCC___CCGG
2. _GC-01-089-5-06
GGCC___TTTTAACC______TTCC___CCGG
3. _GC-01-089-5-06
GGCC___TTTTAACC______TTCC___CCGG
4. _GC-01-089-5-06
GGCC___TTTTAACC______TTCC___CCGG
5. _1506_1
GG______TTTTAA__________________CCGG
6. _1506_2
GG______TTTTAA__________________CCGG
7. _1506_3
GG______TTTTAA__________________CCGG
8. _1506_4
GG______TTTTAA__________________CCGG
9. _Cabiria
_________TTTTAA__________________CCGG
10. _La_Montaña_Lot_6_Row_39_34_36
_________TTTTAA__________________CCGG
11. _RUQ_1683
______CC______AACCCCAA______CC___GG
12. _RUQ_1683
GGGG___TTAAAA_________AA______GGGG
13. _RUQ_1683
_______________AACC_______________CC___
14. _RUQ_1638
_______________AACC_______________CC___
15. _RUQ_1638
GG______TTTTAA__________________CCGG
16. _RUQ_1638
GG______TTTTAA__________________CCGG
17. _MITC-000350
GGGG___TTAAAA_________AA______GGGG
18. _MITC-000039
GGGG___TTAAAA_________AA______GGGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-089-5-06
GGTTTTGG___TTCCCCTTCCTT_________
2. _GC-01-089-5-06
GGTTTTGG___TTCCCCTTCCTT_________
3. _GC-01-089-5-06
GGTTTTGG___TTCCCCTTCCTT_________
4. _GC-01-089-5-06
GGTTTTGG___TTCCCCTTCCTT_________
5. _1506_1
___TT____________CC______CC____________
6. _1506_2
___TT____________CC______CC____________
7. _1506_3
___TT____________CC______CC____________
8. _1506_4
___TT____________CC______CC____________
9. _Cabiria
___AT____________CC______CC____________
10. _La_Montaña_Lot_6_Row_39_34_36
___AT____________CC______CC____________
11. _RUQ_1683
____________CC___CC____________GGAACC
12. _RUQ_1683
CCATAAGG_________GGAA___AA_________
13. _RUQ_1683
GG______GG___TT________________________
14. _RUQ_1638
GG______GG___TT________________________
15. _RUQ_1638
___AT____________CC______CC____________
16. _RUQ_1638
___AT____________CC______CC____________
17. _MITC-000350
CCATAAGG_________GGAA___AA_________
18. _MITC-000039
CCATAAGG_________GGAA___AA_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-089-5-06
AAGGTT____________GG___CCCCTTCCGG
2. _GC-01-089-5-06
AAGGTT____________GG___CCCCTTCCGG
3. _GC-01-089-5-06
AAGGTT____________GG___CCCCTT___GG
4. _GC-01-089-5-06
AAGGTT____________GG___CCCCTTCCGG
5. _1506_1
___GGTT__________________CC___TTCCGG
6. _1506_2
___GGTT__________________CC___TTCCGG
7. _1506_3
___GGTT__________________CC___TT___GG
8. _1506_4
___GGTT__________________CC___TTCCGG
9. _Cabiria
___GGTT_________CC______CC___TTCCGG
10. _La_Montaña_Lot_6_Row_39_34_36
___GGTT_________CC______CC___TTCCGG
11. _RUQ_1683
___GG___GGTT_________AA_________CC___
12. _RUQ_1683
___CCAA______GGCCGG___GGGGAAGGGG
13. _RUQ_1683
___GG_________CC____________CCTTCCGG
14. _RUQ_1638
___GG_________CC____________CCTTCCGG
15. _RUQ_1638
___GGTT_________CC______CC___TTCCGG
16. _RUQ_1638
___GGTT_________CC______CC___TTCCGG
17. _MITC-000350
___CCAA______GGCCGG___GGGGAAGGGG
18. _MITC-000039
___CCAA______GGCCGG___GGGGAAGGGG
 127 128 129 130 131 132 133 134       
1. _GC-01-089-5-06
CC______AAAACCGGAAX_XX_XX_XX_XX_XX_X
2. _GC-01-089-5-06
CC______AAAACCGGAAX_XX_XX_XX_XX_XX_X
3. _GC-01-089-5-06
CC______AAAACCGGAAX_XX_XX_XX_XX_XX_X
4. _GC-01-089-5-06
CC______AAAACCGGAAX_XX_XX_XX_XX_XX_X
5. _1506_1
CC_____________________X_XX_XX_XX_XX_XX_X
6. _1506_2
CC_____________________X_XX_XX_XX_XX_XX_X
7. _1506_3
CC_____________________X_XX_XX_XX_XX_XX_X
8. _1506_4
CC_____________________X_XX_XX_XX_XX_XX_X
9. _Cabiria
CC_____________________X_XX_XX_XX_XX_XX_X
10. _La_Montaña_Lot_6_Row_39_34_36
CC_____________________X_XX_XX_XX_XX_XX_X
11. _RUQ_1683
___CTAA_______________X_XX_XX_XX_XX_XX_X
12. _RUQ_1683
GG______AA___CCGGAAX_XX_XX_XX_XX_XX_X
13. _RUQ_1683
________________________X_XX_XX_XX_XX_XX_X
14. _RUQ_1638
________________________X_XX_XX_XX_XX_XX_X
15. _RUQ_1638
CC_____________________X_XX_XX_XX_XX_XX_X
16. _RUQ_1638
CC_____________________X_XX_XX_XX_XX_XX_X
17. _MITC-000350
GG______AA___CCGGAAX_XX_XX_XX_XX_XX_X
18. _MITC-000039
GG______AA___CCGGAAX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._UF_712 GC-01-089-5-06
Location: Tree: 1
Notes: 1
 Mars, 2018
2._UF_712 GC-01-089-5-06
Location: Tree: 2
Notes: 2
 Mars, 2018
3._UF_712 GC-01-089-5-06
Location: Tree: 3
Notes: 3
 Mars, 2018
4._UF_712 GC-01-089-5-06
Location: Tree: 4
Notes: 4
 Mars, 2018
5._UF_712
Location: 1506 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
6._UF_712
Location: 1506 2
 Dapeng Zhang, 2016
7._UF_712
Location: 1506 3
 Dapeng Zhang, 2016
8._UF_712
Location: 1506 4
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

9._UF_712
Location: Cabiria
 Dapeng Zhang, 2016
10._UF_712
Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

11._UF_712 RUQ 1683
 Lambert Motilal, 2023
12._UF_712 RUQ 1683
Notes: Reading_Collection
 Mars, 2018
13._UF_712 RUQ 1683
 Dapeng Zhang, 2014
14._UF_712 RUQ 1638
 Dapeng Zhang, 2014
15._UF_712 RUQ 1638
 Dapeng Zhang, 2016
16._UF_712 RUQ 1638
 Dapeng Zhang, 2016

USDA-SHRS United States of America

17._UF_712 MITC-000350
 Mars, 2018
18._UF_712 MITC-000039
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133