SNP Profiles of UF-667   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGAGCTCCCTGGCTCCCTAT
1._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
2._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
3._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
4._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
5._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
6._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
7._UF_667
AAAACTAC____CTGG_CC__
8._UF_667
AAAACTAC____CTGG_CC__
9._UF_667
AAAACTAC____CTGG_CC__
10._UF_667
AAAACTAC____CTGG_CC__
11._UF_667
AAAACTAC____CTGG_CC__
12._UF_667
AAAACTAC____CTGG_CC__
13._UF_667
AAAACTAC____CTGG_CC__
14._UF_667
AAAACTAC____CTGG_CC__
15._RUQ_55
AAAACTAC____CTGG_CC__
16._UF_667
AAAACTAC____CTGG_CC__
17._UF_667
AAAACTAC____CTGG_CC__
18._RUQ_55
__CTAA__CT___CTCC__
19._RUQ_55
___AC__CT_______
20._UF_667
AACCCCCC____CCGG_CC__
21._GC-01-29-2-6
AAAA_ACAGAG_GG_GGAGGGAGAT
22._RUQ_55
AAAA_ACAGAG_GG_GGAGGGAGAT
23._UF_667_Fld#_119_Plt#_1
AAAC_ACAGGG_GG_GGAGAGAATT
 1516171819202122232425262728
_Input profile
CCAAAAGGCGGGCTAGTTAGATATCGCG
1._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
2._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
3._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
4._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
5._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
6._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
7._UF_667
__AA__GG____ATAT_CG
8._UF_667
__AA__GG____ATAT_CG
9._UF_667
__AA__GG____ATAT_CG
10._UF_667
__AA__GG____ATAT_CG
11._UF_667
__AA__GG____ATAT_CG
12._UF_667
__AA__GG____ATAT_CG
13._UF_667
__AA__GG____ATAT_CG
14._UF_667
__AA__GG____ATAT_CG
15._RUQ_55
__AA__GG____ATAT_CG
16._UF_667
__AA__GG____ATAT_CG
17._UF_667
__AA__GG____ATAT_CG
18._RUQ_55
____CG____AG_ATCGCG
19._RUQ_55
__AATT_________CG
20._UF_667
__GG__CG____ATAA_GG
21._GC-01-29-2-6
CCAGAACC_GGAGAGAAAGATATCGCG
22._RUQ_55
CCAGAACC_GGAGAGAAAGATATCGCG
23._UF_667_Fld#_119_Plt#_1
ACGGAGCG_GGAGAGAGAGATATCGGG
 2930313233343536373839404142
_Input profile
AACTGTAGCCACAGGTGGGTAGCCAACC
1._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
2._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
3._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
4._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
5._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
6._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
7._UF_667
AA___CC_AGGT__AG___
8._UF_667
AA___CC_AGGT__AG___
9._UF_667
AA___CC_AGGT__AG___
10._UF_667
AA___CC_AGGT__AG___
11._UF_667
AA___CC_AGGT__AG___
12._UF_667
AA___CC_AGGT__AG___
13._UF_667
AA___CC_AGGT__AG___
14._UF_667
AA___CC_AGGT__AG___
15._RUQ_55
AA___CC_AGGT__AG___
16._UF_667
AA___CC_AGGT__AG___
17._UF_667
AA___CC_AGGT__AG___
18._RUQ_55
___AGCCACAGGT__AGCC__
19._RUQ_55
____CC_AG____CC__
20._UF_667
AA___CG_AGGT__GG___
21._GC-01-29-2-6
AAAGACAGCCACAGACCCACAGGGAAGG
22._RUQ_55
AAAGACAGCCACAGACCCACAGGGAAGG
23._UF_667_Fld#_119_Plt#_1
ATAGAAGGCGACAAACCCACAGGGAGGG
 4344454647484950515253545556
_Input profile
GTATCCAGAGCTCCGGGGGTTTCTCTGT
1._GC-01-029-2-06
GTATCCAGAGCTCCGGGGGTTTCTCTGT
2._GC-01-029-2-06
GTATCCAGAGCTCCGGGGGTTTCTCTGT
3._GC-01-029-2-06
GTATCCAGAGCTCCGGGGGTTTCTCTGT
4._GC-01-029-2-06
GTATCCAGAGCTCCGGGGGTTTCTCTGT
5._GC-01-029-2-06
GTATCCAGAGCTCCGGGGGTTTCTCTGT
6._GC-01-029-2-06
GTATCCAGAGCTCCGGGGGTTTCTCTGT
7._UF_667
__CC________CTCT_
8._UF_667
__CC________CTCT_
9._UF_667
__CC________CTCT_
10._UF_667
__CC________CTCT_
11._UF_667
__CC________CTCT_
12._UF_667
__CC________CTCT_
13._UF_667
__CC________CTCT_
14._UF_667
__CC________CTCT_
15._RUQ_55
__CC________CTCT_
16._UF_667
__CC________CTCT_
17._UF_667
__CC________CTCT_
18._RUQ_55
GTAT__AG_____CTCT_GT
19._RUQ_55
____AG_________
20._UF_667
__TT________CTCC_
21._GC-01-29-2-6
AC_GG_AGAG_GGGGACAGAGAGAC
22._RUQ_55
AC_GG_AGAG_GGGGACAGAGAGAC
23._UF_667_Fld#_119_Plt#_1
AC_AG_AAAG_GGAGACGGAAGGAC
 5758596061626364656667686970
_Input profile
AGCGCTCTACGGAGACAGGTGTAGCTCC
1._GC-01-029-2-06
AGCGCTCTACGGAGACAGGTGTAGCTCC
2._GC-01-029-2-06
AGCGCTCTACGGAGACAGGTGTAGCTCC
3._GC-01-029-2-06
AGCGCTCTACGGAGACAGGTGTAGCTCC
4._GC-01-029-2-06
AGCGCTCTACGGAGACAGGTGTAGCTCC
5._GC-01-029-2-06
AG_CTCTACGGAGACAGGTGTAGCTCC
6._GC-01-029-2-06
_CG_CTACGGAGACAGGTGTAGCTCC
7._UF_667
_CG_CTACGG_ACAGGTGT___
8._UF_667
_CG_CTACGG_ACAGGTGT___
9._UF_667
_CG_CTACGG_ACAGGTGT___
10._UF_667
_CG_CTACGG_ACAGGTGT___
11._UF_667
_CG_CTACGG_ACAGGTGT___
12._UF_667
_CG_CTACGG_ACAGGTGT___
13._UF_667
___CTACGG_ACAGGTGT___
14._UF_667
_CG_CTACGG_ACAGGTGT___
15._RUQ_55
_CG_CTACGG_ACAGGTGT___
16._UF_667
_CG_CTACGG_ACAGGTGT___
17._UF_667
_GG_CTACGG_ACAGGTGT___
18._RUQ_55
-CGCTCTAC_AGACAGGTGTAG__
19._RUQ_55
AG______ACAG_GTAG__
20._UF_667
_CC_CTAAGG_ACAGGGGG___
21._GC-01-29-2-6
AGCGAGAGACGGAGACAGACACAG__
22._RUQ_55
AGCGAGAGACGGAGACAGACACAG__
23._UF_667_Fld#_119_Plt#_1
GGGGAGAGAAGGGGCCAAACCCGG__
 7172737475767778798081828384
_Input profile
GGTTACAGACAAAGCCCGCTATACCTCT
1._GC-01-029-2-06
GGTTACAGACAAAGCCCGCTATACCTCT
2._GC-01-029-2-06
GGTTACAGACAAAGCCCGCTATACCTCT
3._GC-01-029-2-06
GGTTACAGACAAAGCCCGCTATACCTCT
4._GC-01-029-2-06
GGTTACAGACAAAGCCCGCTATACCTCT
5._GC-01-029-2-06
GGTTACAGACAAAGCCCGCTATACCTCT
6._GC-01-029-2-06
GGTTACAGACAAAGCCCGCTATACCTCT
7._UF_667
GGTT_____CCCG___CTCT
8._UF_667
GGTT_____CCCG___CTCT
9._UF_667
GGTT_____CCCG___CTCT
10._UF_667
GGTT_____CCCG___CTCT
11._UF_667
GGTT_____CCCG___CTCT
12._UF_667
GGTT_____CCCG___CTCT
13._UF_667
GGTT_____CCCG___CTCT
14._UF_667
AGTT_____CCCG___CTCT
15._RUQ_55
AGTT_____CCCG___CTCT
16._UF_667
AGTT_____CCCG___CTCT
17._UF_667
AGTT_____CCCG___CTCT
18._RUQ_55
_______CCCG__ACCT_
19._RUQ_55
AG______ACCG__AC__
20._UF_667
AACT_____AACG___TTCC
21._GC-01-29-2-6
_AAACAGACAA_CCCGAGATACAGAG
22._RUQ_55
_AAACAGACAA_CCCGAGATACAGAG
23._UF_667_Fld#_119_Plt#_1
_AGAAAAACAA_ACCCAGATCCAAAA
 858687888990919293     
_Input profile
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
1._GC-01-029-2-06
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
2._GC-01-029-2-06
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
3._GC-01-029-2-06
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
4._GC-01-029-2-06
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
5._GC-01-029-2-06
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
6._GC-01-029-2-06
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
7._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
8._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
9._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
10._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
11._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
12._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
13._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
14._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
15._RUQ_55
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
16._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
17._UF_667
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
18._RUQ_55
__AGCCCTGT___X_XX_XX_XX_XX_X
19._RUQ_55
CT__CT_GT___X_XX_XX_XX_XX_X
20._UF_667
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
21._GC-01-29-2-6
_AA__AGAAAAATGGX_XX_XX_XX_XX_X
22._RUQ_55
_AA__AGAAAAATGGX_XX_XX_XX_XX_X
23._UF_667_Fld#_119_Plt#_1
_AG__AGAAAGAAGGX_XX_XX_XX_XX_X

Input profile: UF_667 GC-01-029-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

4._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

6._UF_667 GC-01-029-2-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

9._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

10._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

11._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

12._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

13._UF_667

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

14._UF_667

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._UF_667

98.7 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

17._UF_667

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

18._UF_667 RUQ_55

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._UF_667 RUQ_55

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._UF_667

62.8 %
39 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

56.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._UF_667 RUQ_55

56.3 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._UF_667 UF_667_Fld#_119_Plt#_1

39.9 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240