SNP Profiles of UF-667   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._GC-01-029-2-06
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._GC-01-029-2-06
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._GC-01-029-2-06
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._GC-01-029-2-06
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._GC-01-029-2-06
AAAACTACAGAGCTCC_CTGGCTCCCT
6._GC-01-029-2-06
AAAACTACAGAGCTCC_CTGGCTCCCT
7._UF_667
AAAACTAC____CTCTGG_CC_
8._UF_667
AAAACTAC____CTCTGG_CC_
9._UF_667
AAAACTAC____CTCTGG_CC_
10._UF_667
AAAACTAC____CTCTGG_CC_
11._UF_667
AAAACTAC_____CTGG_CC_
12._UF_667
AAAACTAC____CTCTGG_CC_
13._UF_667
AAAACTAC_____CTGG_CC_
14._UF_667
AAAACTAC____CTCTGG_CC_
15._RUQ_55
AAAACTAC____CTCTGG_CC_
16._UF_667
AAAACTAC____CTCTGG_CC_
17._UF_667
AAAACTAC____CTCTGG_CC_
18._RUQ_55
__CTAA__CT_CT__CTCC_
19._RUQ_55
___AC__CT_______
20._UF_667
AACCCCCC____CCCCGG_CC_
21._GC-01-29-2-6
AAAA_ACAGAG_GGAG_GGAGGGAG
22._RUQ_55
AAAA_ACAGAG_GGAG_GGAGGGAG
23._UF_667_Fld#_119_Plt#_1
AAAC_ACAGGG_GGGG_GGAGAGAA
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._GC-01-029-2-06
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._GC-01-029-2-06
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._GC-01-029-2-06
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._GC-01-029-2-06
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._GC-01-029-2-06
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._GC-01-029-2-06
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._UF_667
___AA__GG____ATAT_
8._UF_667
___AA__GG____ATAT_
9._UF_667
___AA__GG____ATAT_
10._UF_667
___AA__GG____ATAT_
11._UF_667
___AA__GG____ATAT_
12._UF_667
___AA__GG____ATAT_
13._UF_667
___AA__GG____ATAT_
14._UF_667
___AA__GG____ATAT_
15._RUQ_55
___AA__GG____ATAT_
16._UF_667
___AA__GG____ATAT_
17._UF_667
___AA__GG____ATAT_
18._RUQ_55
_____CG____AG_ATCG
19._RUQ_55
___AATT_________
20._UF_667
___GG__CG____ATAA_
21._GC-01-29-2-6
ATCCAGAACC_GGAGAGAAAGATATCG
22._RUQ_55
ATCCAGAACC_GGAGAGAAAGATATCG
23._UF_667_Fld#_119_Plt#_1
TTACGGAGCG_GGAGAGAGAGATATCG
 2930313233343536373839404142
_Input profile
CGAACTGTAGCCACAGGTGGGTAGCCAA
1._GC-01-029-2-06
CGAACTGTAGCCACAGGTGGGTAGCCAA
2._GC-01-029-2-06
CGAACTGTAGCCACAGGTGGGTAGCCAA
3._GC-01-029-2-06
CGAACTGTAGCCACAGGTGGGTAGCCAA
4._GC-01-029-2-06
CGAACTGTAGCCACAGGTGGGTAGCCAA
5._GC-01-029-2-06
CGAACTGTAGCCACAGGTGGGTAGCCAA
6._GC-01-029-2-06
CGAACTGTAGCCACAGGTGGGTAGCCAA
7._UF_667
CGAA___CC_AGGT__AG__
8._UF_667
CGAA___CC_AGGT__AG__
9._UF_667
CGAA___CC_AGGT__AG__
10._UF_667
CGAA___CC_AGGT__AG__
11._UF_667
CGAA___CC_AGGT__AG__
12._UF_667
CGAA___CC_AGGT__AG__
13._UF_667
CGAA___CC_AGGT__AG__
14._UF_667
CGAA___CC_AGGT__AG__
15._RUQ_55
CGAA___CC_AGGT__AG__
16._UF_667
CGAA___CC_AGGT__AG__
17._UF_667
CGAA___CC_AGGT__AG__
18._RUQ_55
CG___AGCCACAGGT__AGCC_
19._RUQ_55
CG____CC_AG____CC_
20._UF_667
GGAA___CG_AGGT__GG__
21._GC-01-29-2-6
CGAAAGACAGCCACAGACCCACAGGGAA
22._RUQ_55
CGAAAGACAGCCACAGACCCACAGGGAA
23._UF_667_Fld#_119_Plt#_1
GGATAGAAGGCGACAAACCCACAGGGAG
 4344454647484950515253545556
_Input profile
CCGTATCCAGAGAGCTCCGGGGGTTTCT
1._GC-01-029-2-06
CCGTATCCAGAGAGCTCCGGGGGTTTCT
2._GC-01-029-2-06
CCGTATCCAGAGAGCTCCGGGGGTTTCT
3._GC-01-029-2-06
CCGTATCCAGAGAGCTCCGGGGGTTTCT
4._GC-01-029-2-06
CCGTATCCAGAGAGCTCCGGGGGTTTCT
5._GC-01-029-2-06
CCGTATCCAGAG_CTCCGGGGGTTTCT
6._GC-01-029-2-06
CCGTATCCAGAGAGCTCCGGGGGTTTCT
7._UF_667
___CC_________CT
8._UF_667
___CC_________CT
9._UF_667
___CC_________CT
10._UF_667
___CC_________CT
11._UF_667
___CC_________CT
12._UF_667
___CC_________CT
13._UF_667
___CC_________CT
14._UF_667
___CC_________CT
15._RUQ_55
___CC_________CT
16._UF_667
___CC_________CT
17._UF_667
___CC_________CT
18._RUQ_55
_GTAT__AG______CTCT
19._RUQ_55
_____AG________
20._UF_667
___TT_________CT
21._GC-01-29-2-6
GGAC_GG_AGAGAG_GGGGACAGAG
22._RUQ_55
GGAC_GG_AGAGAG_GGGGACAGAG
23._UF_667_Fld#_119_Plt#_1
GGAC_AG_AAAAAG_GGAGACGGAA
 5758596061626364656667686970
_Input profile
CTGTAGCGCTCTACGGAGACAGGTGTAG
1._GC-01-029-2-06
CTGTAGCGCTCTACGGAGACAGGTGTAG
2._GC-01-029-2-06
CTGTAGCGCTCTACGGAGACAGGTGTAG
3._GC-01-029-2-06
CTGTAGCGCTCTACGGAGACAGGTGTAG
4._GC-01-029-2-06
CTGTAG_CTCTACGGAGACAGGTGTAG
5._GC-01-029-2-06
CTGTAGCGCTCTACGGAGACAGGTGTAG
6._GC-01-029-2-06
CTGT_CG_CTACGGAGACAGGTGTAG
7._UF_667
CT__CG_CTACGG_ACAGGTGT_
8._UF_667
CT__CG_CTACGG_ACAGGTGT_
9._UF_667
CT__CG_CTACGG_ACAGGTGT_
10._UF_667
CT__CG_CTACGG_ACAGGTGT_
11._UF_667
CT__CG_CTACGG_ACAGGTGT_
12._UF_667
CT____CTACGG_ACAGGTGT_
13._UF_667
CT__CG_CTACGG_ACAGGTGT_
14._UF_667
CT__CG_CTACGG_ACAGGTGT_
15._RUQ_55
CT__CG_CTACGG_ACAGGTGT_
16._UF_667
CT__CG_CTACGG_ACAGGTGT_
17._UF_667
CT__GG_CTACGG_ACAGGTGT_
18._RUQ_55
_GT-CGCTCTAC_AGACAGGTGTAG
19._RUQ_55
__AG______ACAG_GTAG
20._UF_667
CC__CC_CTAAGG_ACAGGGGG_
21._GC-01-29-2-6
AGACAGCGAGAGACGGAGACAGACACAG
22._RUQ_55
AGACAGCGAGAGACGGAGACAGACACAG
23._UF_667_Fld#_119_Plt#_1
GGACGGGGAGAGAAGGGGCCAAACCCGG
 7172737475767778798081828384
_Input profile
CTCCGGTTACAGACAAAGCCCGCTATAC
1._GC-01-029-2-06
CTCCGGTTACAGACAAAGCCCGCTATAC
2._GC-01-029-2-06
CTCCGGTTACAGACAAAGCCCGCTATAC
3._GC-01-029-2-06
CTCCGGTTACAGACAAAGCCCGCTATAC
4._GC-01-029-2-06
CTCCGGTTACAGACAAAGCCCGCTATAC
5._GC-01-029-2-06
CTCCGGTTACAGACAAAGCCCGCTATAC
6._GC-01-029-2-06
CTCCGGTTACAGACAAAGCCCGCTATAC
7._UF_667
__GGTT_____CCCG___
8._UF_667
__GGTT_____CCCG___
9._UF_667
__GGTT_____CCCG___
10._UF_667
__GGTT_____CCCG___
11._UF_667
__GGTT_____CCCG___
12._UF_667
__GGTT_____CCCG___
13._UF_667
__GGTT_____CCCG___
14._UF_667
__AGTT_____CCCG___
15._RUQ_55
__AGTT_____CCCG___
16._UF_667
__AGTT_____CCCG___
17._UF_667
__AGTT_____CCCG___
18._RUQ_55
_________CCCG__AC
19._RUQ_55
__AG______ACCG__AC
20._UF_667
__AACT_____AACG___
21._GC-01-29-2-6
___AAACAGACAA_CCCGAGATAC
22._RUQ_55
___AAACAGACAA_CCCGAGATAC
23._UF_667_Fld#_119_Plt#_1
___AGAAAAACAA_ACCCAGATCC
 8586878889909192939495   
_Input profile
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
1._GC-01-029-2-06
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
2._GC-01-029-2-06
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
3._GC-01-029-2-06
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
4._GC-01-029-2-06
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
5._GC-01-029-2-06
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
6._GC-01-029-2-06
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
7._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
8._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
9._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
10._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
11._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
12._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
13._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
14._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
15._RUQ_55
CTCTCT_AG_CTGTTT__X_XX_XX_X
16._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
17._UF_667
CTCTCT_AG_CTGTTT__X_XX_XX_X
18._RUQ_55
CT___AGCCCTGT___X_XX_XX_X
19._RUQ_55
__CT__CT_GT___X_XX_XX_X
20._UF_667
TTCCCC_AG_CCTTTT__X_XX_XX_X
21._GC-01-29-2-6
AGAG_AA__AGAAAAATGGX_XX_XX_X
22._RUQ_55
AGAG_AA__AGAAAAATGGX_XX_XX_X
23._UF_667_Fld#_119_Plt#_1
AAAA_AG__AGAAAGAAGGX_XX_XX_X

Input profile: UF_667 GC-01-029-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

1._UF_667 GC-01-029-2-06

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._UF_667 GC-01-029-2-06

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._UF_667 GC-01-029-2-06

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._UF_667 GC-01-029-2-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

5._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._UF_667

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

8._UF_667

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

9._UF_667

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

10._UF_667

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

11._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

13._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

14._UF_667

98.8 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._UF_667

98.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

17._UF_667

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

18._UF_667 RUQ_55

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._UF_667 RUQ_55

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._UF_667

62.5 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._UF_667 RUQ_55

56.2 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._UF_667 UF_667_Fld#_119_Plt#_1

39.5 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240