SNP Profiles of UF-667   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGAGCTCCCTGGCTCCCTAT
1._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
2._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
3._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
4._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
5._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
6._GC-01-029-2-06
AAAACTACAGAGCTCCCTGGCTCCCTAT
7._UF_667
AAAACTAC____CTGG_CC__
8._UF_667
AAAACTAC____CTGG_CC__
9._UF_667
AAAACTAC____CTGG_CC__
10._UF_667
AAAACTAC____CTGG_CC__
11._UF_667
AAAACTAC____CTGG_CC__
12._UF_667
AAAACTAC____CTGG_CC__
13._UF_667
AAAACTAC____CTGG_CC__
14._UF_667
AAAACTAC____CTGG_CC__
15._RUQ_55
AAAACTAC____CTGG_CC__
16._UF_667
AAAACTAC____CTGG_CC__
17._UF_667
AAAACTAC____CTGG_CC__
18._RUQ_55
__CTAA__CT___CTCC__
19._RUQ_55
___AC__CT_______
20._UF_667
AACCCCCC____CCGG_CC__
21._GC-01-29-2-6
AAAA_ACAGAG_GG_GGAGGGAGAT
22._RUQ_55
AAAA_ACAGAG_GG_GGAGGGAGAT
23._UF_667_Fld#_119_Plt#_1
AAAC_ACAGGG_GG_GGAGAGAATT
 1516171819202122232425262728
_Input profile
CCAAAAGGCGGGCTAGTTAGATATCGCG
1._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
2._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
3._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
4._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
5._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
6._GC-01-029-2-06
CCAAAAGGCGGGCTAGTTAGATATCGCG
7._UF_667
__AA__GG____ATAT_CG
8._UF_667
__AA__GG____ATAT_CG
9._UF_667
__AA__GG____ATAT_CG
10._UF_667
__AA__GG____ATAT_CG
11._UF_667
__AA__GG____ATAT_CG
12._UF_667
__AA__GG____ATAT_CG
13._UF_667
__AA__GG____ATAT_CG
14._UF_667
__AA__GG____ATAT_CG
15._RUQ_55
__AA__GG____ATAT_CG
16._UF_667
__AA__GG____ATAT_CG
17._UF_667
__AA__GG____ATAT_CG
18._RUQ_55
____CG____AG_ATCGCG
19._RUQ_55
__AATT_________CG
20._UF_667
__GG__CG____ATAA_GG
21._GC-01-29-2-6
CCAGAACC_GGAGAGAAAGATATCGCG
22._RUQ_55
CCAGAACC_GGAGAGAAAGATATCGCG
23._UF_667_Fld#_119_Plt#_1
ACGGAGCG_GGAGAGAGAGATATCGGG
 2930313233343536373839404142
_Input profile
AACTGTAGCCACAGGTGGGTAGCCAACC
1._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
2._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
3._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
4._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
5._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
6._GC-01-029-2-06
AACTGTAGCCACAGGTGGGTAGCCAACC
7._UF_667
AA___CC_AGGT__AG___
8._UF_667
AA___CC_AGGT__AG___
9._UF_667
AA___CC_AGGT__AG___
10._UF_667
AA___CC_AGGT__AG___
11._UF_667
AA___CC_AGGT__AG___
12._UF_667
AA___CC_AGGT__AG___
13._UF_667
AA___CC_AGGT__AG___
14._UF_667
AA___CC_AGGT__AG___
15._RUQ_55
AA___CC_AGGT__AG___
16._UF_667
AA___CC_AGGT__AG___
17._UF_667
AA___CC_AGGT__AG___
18._RUQ_55
___AGCCACAGGT__AGCC__
19._RUQ_55
____CC_AG____CC__
20._UF_667
AA___CG_AGGT__GG___
21._GC-01-29-2-6
AAAGACAGCCACAGACCCACAGGGAAGG
22._RUQ_55
AAAGACAGCCACAGACCCACAGGGAAGG
23._UF_667_Fld#_119_Plt#_1
ATAGAAGGCGACAAACCCACAGGGAGGG
 4344454647484950515253545556
_Input profile
GTATCCAGAGAGCTCCGGGGGTTTCTCT
1._GC-01-029-2-06
GTATCCAGAGAGCTCCGGGGGTTTCTCT
2._GC-01-029-2-06
GTATCCAGAGAGCTCCGGGGGTTTCTCT
3._GC-01-029-2-06
GTATCCAGAGAGCTCCGGGGGTTTCTCT
4._GC-01-029-2-06
GTATCCAGAGAGCTCCGGGGGTTTCTCT
5._GC-01-029-2-06
GTATCCAGAG_CTCCGGGGGTTTCTCT
6._GC-01-029-2-06
GTATCCAGAGAGCTCCGGGGGTTTCTCT
7._UF_667
__CC_________CTCT
8._UF_667
__CC_________CTCT
9._UF_667
__CC_________CTCT
10._UF_667
__CC_________CTCT
11._UF_667
__CC_________CTCT
12._UF_667
__CC_________CTCT
13._UF_667
__CC_________CTCT
14._UF_667
__CC_________CTCT
15._RUQ_55
__CC_________CTCT
16._UF_667
__CC_________CTCT
17._UF_667
__CC_________CTCT
18._RUQ_55
GTAT__AG______CTCT_
19._RUQ_55
____AG_________
20._UF_667
__TT_________CTCC
21._GC-01-29-2-6
AC_GG_AGAGAG_GGGGACAGAGAG
22._RUQ_55
AC_GG_AGAGAG_GGGGACAGAGAG
23._UF_667_Fld#_119_Plt#_1
AC_AG_AAAAAG_GGAGACGGAAGG
 5758596061626364656667686970
_Input profile
GTCGCTACGGAGACAGGTGTAGCTCCGG
1._GC-01-029-2-06
GTCGCTACGGAGACAGGTGTAGCTCCGG
2._GC-01-029-2-06
GTCGCTACGGAGACAGGTGTAGCTCCGG
3._GC-01-029-2-06
GTCGCTACGGAGACAGGTGTAGCTCCGG
4._GC-01-029-2-06
GTCGCTACGGAGACAGGTGTAGCTCCGG
5._GC-01-029-2-06
GTCGCTACGGAGACAGGTGTAGCTCCGG
6._GC-01-029-2-06
GT_CTACGGAGACAGGTGTAGCTCCGG
7._UF_667
_CGCTACGG_ACAGGTGT___GG
8._UF_667
_CGCTACGG_ACAGGTGT___GG
9._UF_667
_CGCTACGG_ACAGGTGT___GG
10._UF_667
_CGCTACGG_ACAGGTGT___GG
11._UF_667
_CGCTACGG_ACAGGTGT___GG
12._UF_667
_CGCTACGG_ACAGGTGT___GG
13._UF_667
__CTACGG_ACAGGTGT___GG
14._UF_667
_CGCTACGG_ACAGGTGT___AG
15._RUQ_55
_CGCTACGG_ACAGGTGT___AG
16._UF_667
_CGCTACGG_ACAGGTGT___AG
17._UF_667
_GGCTACGG_ACAGGTGT___AG
18._RUQ_55
GTCGCTAC_AGACAGGTGTAG___
19._RUQ_55
______ACAG_GTAG__AG
20._UF_667
_CCCTAAGG_ACAGGGGG___AA
21._GC-01-29-2-6
ACCGAGACGGAGACAGACACAG___
22._RUQ_55
ACCGAGACGGAGACAGACACAG___
23._UF_667_Fld#_119_Plt#_1
ACGGAGAAGGGGCCAAACCCGG___
 7172737475767778798081828384
_Input profile
TTACAGACAAAGCCCGCTATACCTCTCT
1._GC-01-029-2-06
TTACAGACAAAGCCCGCTATACCTCTCT
2._GC-01-029-2-06
TTACAGACAAAGCCCGCTATACCTCTCT
3._GC-01-029-2-06
TTACAGACAAAGCCCGCTATACCTCTCT
4._GC-01-029-2-06
TTACAGACAAAGCCCGCTATACCTCTCT
5._GC-01-029-2-06
TTACAGACAAAGCCCGCTATACCTCTCT
6._GC-01-029-2-06
TTACAGACAAAGCCCGCTATACCTCTCT
7._UF_667
TT_____CCCG___CTCTCT
8._UF_667
TT_____CCCG___CTCTCT
9._UF_667
TT_____CCCG___CTCTCT
10._UF_667
TT_____CCCG___CTCTCT
11._UF_667
TT_____CCCG___CTCTCT
12._UF_667
TT_____CCCG___CTCTCT
13._UF_667
TT_____CCCG___CTCTCT
14._UF_667
TT_____CCCG___CTCTCT
15._RUQ_55
TT_____CCCG___CTCTCT
16._UF_667
TT_____CCCG___CTCTCT
17._UF_667
TT_____CCCG___CTCTCT
18._RUQ_55
______CCCG__ACCT__
19._RUQ_55
______ACCG__AC__CT
20._UF_667
CT_____AACG___TTCCCC
21._GC-01-29-2-6
AAACAGACAA_CCCGAGATACAGAG_
22._RUQ_55
AAACAGACAA_CCCGAGATACAGAG_
23._UF_667_Fld#_119_Plt#_1
AGAAAAACAA_ACCCAGATCCAAAA_
 8586878889909192      
_Input profile
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
1._GC-01-029-2-06
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
2._GC-01-029-2-06
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
3._GC-01-029-2-06
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
4._GC-01-029-2-06
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
5._GC-01-029-2-06
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
6._GC-01-029-2-06
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
7._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
8._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
9._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
10._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
11._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
12._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
13._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
14._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
15._RUQ_55
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
16._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
17._UF_667
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
18._RUQ_55
_AGCCCTGT___X_XX_XX_XX_XX_XX_X
19._RUQ_55
__CT_GT___X_XX_XX_XX_XX_XX_X
20._UF_667
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
21._GC-01-29-2-6
AA__AGAAAAATGGX_XX_XX_XX_XX_XX_X
22._RUQ_55
AA__AGAAAAATGGX_XX_XX_XX_XX_XX_X
23._UF_667_Fld#_119_Plt#_1
AG__AGAAAGAAGGX_XX_XX_XX_XX_XX_X

Input profile: UF_667 GC-01-029-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

4._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_667 GC-01-029-2-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._UF_667 GC-01-029-2-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

7._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

9._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

10._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

11._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

12._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

13._UF_667

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

14._UF_667

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._UF_667

98.7 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

17._UF_667

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

18._UF_667 RUQ_55

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._UF_667 RUQ_55

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._UF_667

62.8 %
39 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

57.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._UF_667 RUQ_55

57.1 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._UF_667 UF_667_Fld#_119_Plt#_1

40.4 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP226 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240