SNP Profiles of UF-29   View Data

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 Key

 1234567891011121314
_Input profile
ATAACTACAGAGCTCTCCCCTTCTTTAT
1._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
2._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
3._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
4._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
5._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
6._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
7._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
8._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
9._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
10._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
11._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
12._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
13._UF_29
ATAACTAC____CCCC_CT__
14._UF_29
ATAACTAC____CCCC_CT__
15._UF_29
ATAACTAC____CCCC_CT__
16._UF_29
ATAACTAC____CCCC_CT__
17._UF_29
ATAACTAC____CCCC_CT__
18._UF_29
ATAACTAC____CCCC_CT__
19._UF_29
ATAACTAC____CCCC_CT__
20._UF_29
ATAACTAC____CCCC_CT__
21._UF_29
ATAACTAC____CCCC_CT__
22._UF_29
ATAACTAC____CCCC_CT__
23._UF_29
ATAACTAC____CCCC_CT__
24._UF_29
ATAACTAC____CCCC_CT__
25._UF_29
ATAACTAC____CCCC_CT__
26._UF_29
ATACCTAC____CCCC_CT__
27._UF_29
ATACCTAC____CCCC_CT__
28._UF_29
ATACCTAC_____CC_CT__
29._UF_29_Fld#_20_Plt#_5
AT__ACAGAG_AGGG_AAAGAAAT
 1516171819202122232425262728
_Input profile
ACAAAGCGCGGGCTAACTGGATATCCGG
1._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
2._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
3._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
4._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
5._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
6._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
7._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
8._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
9._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
10._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
11._GC-01-020-1-20
ACAAAGCGCGGG_AACTGGATATCCGG
12._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
13._UF_29
__AG__GG____ATAT_GG
14._UF_29
__AG__GG____ATAT_GG
15._UF_29
__AG__GG____ATAT_GG
16._UF_29
__AG__GG____ATAT_GG
17._UF_29
__AG__GG____ATAT_GG
18._UF_29
__AG__GG____ATAT_GG
19._UF_29
__AG__GG____ATAT_GG
20._UF_29
__AG__GG____ATAT_GG
21._UF_29
__AG__GG____ATAT_GG
22._UF_29
__AG__GG____ATAT_GG
23._UF_29
__AG__GG____ATAT_GG
24._UF_29
__AG__GG____ATAT_GG
25._UF_29
__AG__GG____ATAT_GG
26._UF_29
__AG__GG____ATAT_GG
27._UF_29
__AG__GG____ATAT_GG
28._UF_29
__AG__GG____ATAT_GG
29._UF_29_Fld#_20_Plt#_5
ACAGAGCG_GGAGAGAGGGATATGGCC
 2930313233343536373839404142
_Input profile
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
1._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
2._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
3._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
4._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
5._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
6._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
7._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
8._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
9._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
10._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
11._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
12._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
13._UF_29
AT___CG_AGGT__AG___
14._UF_29
AT___CG_AGGT__AG___
15._UF_29
AT___CG_AGGT__AG___
16._UF_29
AT___CG_AGGT__AG___
17._UF_29
AT___CG_AGGT__AG___
18._UF_29
AT___CG_AGGT__AG___
19._UF_29
AT___CG_AGGT__AG___
20._UF_29
AT___CG_AGGT__AG___
21._UF_29
AT___CG_AGGT__AG___
22._UF_29
AT___CG_AGGT__AG___
23._UF_29
AT___CG_AGGT__AG___
24._UF_29
AT___CG_AGGT__AG___
25._UF_29
AT___CG_AGGT__AG___
26._UF_29
AT___CG_AGGT__AG___
27._UF_29
AT___CG_AGGT__AG___
28._UF_29
____CG__GT__AG___
29._UF_29_Fld#_20_Plt#_5
ATAAACAGCGCCAGACCCAAAGGGAGCG
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCACGGAGTTTTCTCT
1._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
2._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
3._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
4._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
5._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
6._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
7._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
8._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
9._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
10._GC-01-020-1-20
GGTTCTAAGGAACC_GGAGTTTTCTCT
11._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
12._GC-01-020-1-20
GGTT_AAGGAACCACGGAGTTTTCTCT
13._UF_29
__CT_________CTCT
14._UF_29
__CT_________CTCT
15._UF_29
__CT_________CTCT
16._UF_29
__CT_________CTCT
17._UF_29
__CT_________CTCT
18._UF_29
__CT_________CTCT
19._UF_29
__CT_________CTCT
20._UF_29
__CT_________CTCT
21._UF_29
__CT_________CTCT
22._UF_29
__CT_________CTCT
23._UF_29
__CT_________CTCT
24._UF_29
__CT_________CTCT
25._UF_29
____________CTCT
26._UF_29
__CT_________CTCT
27._UF_29
__CT_________CTCT
28._UF_29
__CT_________CT_
29._UF_29_Fld#_20_Plt#_5
CC_AG_GGAAGG_GGAGAAAAAGAG
 5758596061626364656667686970
_Input profile
TTAGCCCTCTACCGAGCCAAGTGGAGTT
1._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
2._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
3._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
4._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
5._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
6._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
7._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
8._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
9._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
10._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
11._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
12._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
13._UF_29
__CC_CTACCG_CCAAGTGG__
14._UF_29
__CC_CTACCG_CCAAGTGG__
15._UF_29
__CC_CTACCG_CCAAGTGG__
16._UF_29
__CC_CTACCG_CCAAGTGG__
17._UF_29
__CC_CTACCG_CCAAGTGG__
18._UF_29
__CC_CTACCG_CCAAGTGG__
19._UF_29
__CC_CTACCG_CCAAGTGG__
20._UF_29
__CC_CTACCG_CCAAGTGG__
21._UF_29
__CC_CTACCG_CCAAGTGG__
22._UF_29
__CC_CTACCG_CCAAGTGG__
23._UF_29
__CC_CTACCG_CCAAGTGG__
24._UF_29
__CC_CTACCG_CCAAGTGG__
25._UF_29
__CC_CTACCG_CCAAGTGG__
26._UF_29
__CC_CTACCG_CCAAGTGG__
27._UF_29
____CTACCG_CCAAGTGG__
28._UF_29
____CTACCG_CCAA_GG__
29._UF_29_Fld#_20_Plt#_5
AAAGGGAGAGACCGAGCCAAACCCAG_
 7172737475767778798081828384
_Input profile
CCAGCTACAGACACAAACCGCCATACCT
1._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
2._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
3._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
4._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
5._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
6._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
7._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
8._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
9._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
10._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
11._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
12._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
13._UF_29
_AGCT_____ACCG___CT
14._UF_29
_AGCT_____ACCG___CT
15._UF_29
_AGCT_____ACCG___CT
16._UF_29
_AGCT_____ACCG___CT
17._UF_29
_AGCT_____ACCG___CT
18._UF_29
_AGCT_____ACCG___CT
19._UF_29
_AGCT_____ACCG___CT
20._UF_29
_AGCT_____ACCG___CT
21._UF_29
_AGCT_____ACCG___CT
22._UF_29
_AGCT_____ACCG___CT
23._UF_29
_AGCT_____ACCG___CT
24._UF_29
_AGCT_____ACCG___CT
25._UF_29
_AGCT_____ACCG___CT
26._UF_29
_AACT_____ACCG___CT
27._UF_29
_AACT_____ACCG___CT
28._UF_29
_AACT_____ACCG___CT
29._UF_29_Fld#_20_Plt#_5
__AGACAGACAC_ACCGGGATACAG
 85868788899091929394    
_Input profile
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
1._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
2._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
3._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
4._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
5._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
6._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
7._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
8._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
9._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
10._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
11._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
12._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
13._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
14._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
15._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
16._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
17._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
18._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
19._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
20._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
21._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
22._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
23._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
24._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
25._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
26._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
27._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
28._UF_29
TT____CCGTCT__X_XX_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AA_AA__GGACAGATGGX_XX_XX_XX_X

Input profile: UF_29 GC-01-020-1-20

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

1._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

8._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

14._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

15._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

16._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

17._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

18._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

19._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

20._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

21._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

22._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

23._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

24._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

25._UF_29

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

26._UF_29

97.4 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

28._UF_29

96.8 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

53.2 %
79 shared markers

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USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240