SNP Profiles of EQX-69   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCTTCCGGAACTCTCTCTGGTTCCCT
1._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
2._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
3._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
4._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
5._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
6._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
7._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
8._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
9._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
10._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
11._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
12._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
13._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
14._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
15._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
16._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
17._EQX_69_[EQX]
AACCTTCC________CTCTGG__CC__
18._RUQ_100
______CC____TT__CT____TTCC__
19._RUQ_100
AACCCTCC________CTCTAG__CC__
20._RUQ_100
______CC____TT______________
21._RUQ_100B
______CC____TT______________
22._GC-01-8-1-8
AACC__CCGGAA__AGAG__GGAAGGAG
23._RUQ_100
AACC__CCGGAA__AGAG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACGGCCCCGGCCAATTAGATAACGCG
1._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
2._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
3._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
4._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
5._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
6._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
7._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
8._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
9._EQX_69_[EQX]
____GG____GG________ATAA__CG
10._EQX_69_[EQX]
____GG____GG________ATAA__CG
11._EQX_69_[EQX]
____GG____GG________ATAA__CG
12._EQX_69_[EQX]
____GG____GG________ATAA__CG
13._EQX_69_[EQX]
____GG____GG________ATAA__CG
14._EQX_69_[EQX]
____GG____GG________ATAA__CG
15._EQX_69_[EQX]
____GG____GG________ATAA__CG
16._EQX_69_[EQX]
____GG____GG________ATAA__CG
17._EQX_69_[EQX]
____GG____GG________ATAA__CG
18._RUQ_100
________CC________AG__AACCCG
19._RUQ_100
____GG____GG________ATAA__CG
20._RUQ_100
____GGCT__________________CG
21._RUQ_100B
____GGCT__________________CG
22._GC-01-8-1-8
ATACGGGG__GGGGAAAAAGATAACGCG
23._RUQ_100
ATACGGGG__GGGGAAAAAGATAACGCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTGTGGCGCCAGGGGTGTAACTAGCC
1._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
2._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
3._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
4._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
5._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
6._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
7._GC-01-008-1-08
ATTTGT__CGCCAGGGGTGTAACTAGCC
8._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
9._EQX_69_[EQX]
AT______CG__AGGG____AA______
10._EQX_69_[EQX]
AT______CG__AGGG____AA______
11._EQX_69_[EQX]
AT______CG__AGGG____AA______
12._EQX_69_[EQX]
AT______CG__AGGG____AA______
13._EQX_69_[EQX]
AT______CG__AGGG____AA______
14._EQX_69_[EQX]
AT______CG__AGGG____AA______
15._EQX_69_[EQX]
AT______CG__AGGG____AA______
16._EQX_69_[EQX]
AT______CG__AGGG____AA______
17._EQX_69_[EQX]
AT______CG__AGGG____AA______
18._RUQ_100
______GGCGCCAGGG____AACT____
19._RUQ_100
AT______CG__AGGG____AG______
20._RUQ_100
________CG__AG________CT____
21._RUQ_100B
________CG__AG________CT____
22._GC-01-8-1-8
ATAAACGGCGCCAGCCACACAAAGAGGG
23._RUQ_100
ATAAACGGCGCCAGCCACACAAAGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAAAACCACAGAAGTTTCTCT
1._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
2._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
3._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
4._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
5._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
6._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
7._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
8._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
9._EQX_69_[EQX]
____TT__________________CTCT
10._EQX_69_[EQX]
____TT__________________CTCT
11._EQX_69_[EQX]
____TT__________________CTCT
12._EQX_69_[EQX]
____TT__________________CTCT
13._EQX_69_[EQX]
____TT__________________CTCT
14._EQX_69_[EQX]
____TT__________________CTCT
15._EQX_69_[EQX]
____TT__________________CTCT
16._EQX_69_[EQX]
____TT__________________CTCT
17._EQX_69_[EQX]
____TT__________________CTCT
18._RUQ_100
GGTT____AA____________TTCT__
19._RUQ_100
____TT__________________CTCT
20._RUQ_100
________AA__________________
21._RUQ_100B
________AA__________________
22._GC-01-8-1-8
CC__AA__AAAAGG__AGAAACAAAGAG
23._RUQ_100
CC__AA__AAAAGG__AGAAACAAAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
1._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
2._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
3._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
4._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
5._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
6._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
7._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
8._GC-01-008-1-08
GTAGCCTTTT__GGGG__AAGTGGAGTT
9._EQX_69_[EQX]
____CC__TTAAGG__CCAAGTGG____
10._EQX_69_[EQX]
____CC__TTAAGG__CCAAGTGG____
11._EQX_69_[EQX]
____CC__TTAAGG__CCAAGTGG____
12._EQX_69_[EQX]
____CC__TTAAGG__CCAAGTGG____
13._EQX_69_[EQX]
____CC__TTAAGG__CCAAGTGG____
14._EQX_69_[EQX]
____CC__TTAAGG__CCAAGTGG____
15._EQX_69_[EQX]
____CC__TTAAGG__CCAAGTGG____
16._EQX_69_[EQX]
____CC__TTAAGG__CCAAGTGG____
17._EQX_69_[EQX]
____CC__TT__GG____AAGTGG____
18._RUQ_100
GT__CCTTTTAA__GGCCAAGTGGAG__
19._RUQ_100
____CC__TTAAGG__CCAAGTGG____
20._RUQ_100
__AG____________CCAA__GGAG__
21._RUQ_100B
__AG____________CCAA__GGAG__
22._GC-01-8-1-8
ACAGGGAAAAAAGGGGCCAAACCCAG__
23._RUQ_100
ACAGGGAAAAAAGGGGCCAAACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTAAAAACACGGCCCGCCAAACCT
1._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
2._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
3._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
4._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
5._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCC__ACCT
6._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
7._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
8._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
9._EQX_69_[EQX]
__AACT__________CCCG______CT
10._EQX_69_[EQX]
__AACT__________CCCG______CT
11._EQX_69_[EQX]
__AACT__________CCCG______CT
12._EQX_69_[EQX]
__AACT__________CCCG______CT
13._EQX_69_[EQX]
__AACT__________CCCG______CT
14._EQX_69_[EQX]
__AACT__________CCCG______CT
15._EQX_69_[EQX]
__AACT__________CCCG______CT
16._EQX_69_[EQX]
__AACT__________CCCG______CT
17._EQX_69_[EQX]
__AACT__________CCCG______CT
18._RUQ_100
________________CCCG____ACCT
19._RUQ_100
__AACT__________CCCG______CT
20._RUQ_100
__AA____________CCCG____AC__
21._RUQ_100B
__AA____________CCCG____AC__
22._GC-01-8-1-8
____AGAAAAACAC__CCCGGGAAACAG
23._RUQ_100
____AGAAAAACAC__CCCGGGAAACAG
 85 86 87 88 89 90 91 92 93      
_Input profile
TTCTCTCCCTTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-008-1-08
TTCTCTCCCTTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-008-1-08
TTCTCTCCCTTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-008-1-08
TTCTCTCCCTTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-008-1-08
TTCTCTCCCTTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-008-1-08
TTCTCTCCCTTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-008-1-08
TTCT__CCCTTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-008-1-08
TTCTCTCCCTTTTTAAGGX_XX_XX_XX_XX_X
8._GC-01-008-1-08
TTCTCTCCCTTTTTAAGGX_XX_XX_XX_XX_X
9._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
10._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
11._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
12._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
13._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
14._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
15._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
16._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
17._EQX_69_[EQX]
TTCT____CTTTTT____X_XX_XX_XX_XX_X
18._RUQ_100
______CCCTTT______X_XX_XX_XX_XX_X
19._RUQ_100
TTCT____CTTTTT____X_XX_XX_XX_XX_X
20._RUQ_100
__CT__CC__TT______X_XX_XX_XX_XX_X
21._RUQ_100B
__CT__CC__TT______X_XX_XX_XX_XX_X
22._GC-01-8-1-8
AA__AG__AGAAAATTGGX_XX_XX_XX_XX_X
23._RUQ_100
AA__AG__AGAAAATTGGX_XX_XX_XX_XX_X

Input profile: EQX_69_[EQX] GC-01-008-1-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

4._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._EQX_69_[EQX] GC-01-008-1-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

9._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 1
 Dapeng Zhang, 2016

10._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 2
 Dapeng Zhang, 2016

11._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 3
 Dapeng Zhang, 2016

12._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 12
 Dapeng Zhang, 2016

13._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 16
 Dapeng Zhang, 2016

14._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 10 > F
 Dapeng Zhang, 2016

15._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 14 > F
 Dapeng Zhang, 2016

16._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 7 > FP
 Dapeng Zhang, 2016

17._EQX_69_[EQX]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 9 > FP
 Dapeng Zhang, 2016

18._EQX_69_[EQX] RUQ_100

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._EQX_69_[EQX] RUQ_100

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._EQX_69_[EQX] RUQ_100

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._EQX_69_[EQX] RUQ_100B

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._EQX_69_[EQX] GC-01-8-1-8

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

23._EQX_69_[EQX] RUQ_100

53.8 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240