SNP Profiles of EQX-69   View Data

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 Key

 1234567891011121314
_Input profile
AACCTTCCGGAACTCTCTCTGGTTCCCT
1._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
2._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
3._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
4._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
5._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
6._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
7._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
8._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
9._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
10._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
11._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
12._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
13._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
14._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
15._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
16._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
17._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
18._RUQ_100
__-CC__TT_CT__TTCC_
19._RUQ_100
AACCCTCC____CTCTAG_CC_
20._RUQ_100
___CC__TT_______
21._GC-01-8-1-8
AACC_CCGGAA_AGAG_GGAAGGAG
22._RUQ_100
AACC_CCGGAA_AGAG_GGAAGGAG
 1516171819202122232425262728
_Input profile
ATACGGCCCCGGCCAATTAGATAACGCG
1._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
2._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
3._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
4._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
5._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
6._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
7._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
8._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
9._EQX_69_[EQX]
__GG__GG____ATAA_CG
10._EQX_69_[EQX]
__GG__GG____ATAA_CG
11._EQX_69_[EQX]
__GG__GG____ATAA_CG
12._EQX_69_[EQX]
__GG__GG____ATAA_CG
13._EQX_69_[EQX]
__GG__GG____ATAA_CG
14._EQX_69_[EQX]
__GG__GG____ATAA_CG
15._EQX_69_[EQX]
__GG__GG____ATAA_CG
16._EQX_69_[EQX]
__GG__GG____ATAA_CG
17._EQX_69_[EQX]
__GG__GG____ATAA_CG
18._RUQ_100
____CC____AG_AACCCG
19._RUQ_100
__GG__GG____ATAA_CG
20._RUQ_100
__GGCT_________CG
21._GC-01-8-1-8
ATACGGGG_GGGGAAAAAGATAACGCG
22._RUQ_100
ATACGGGG_GGGGAAAAAGATAACGCG
 2930313233343536373839404142
_Input profile
ATTTGTGGCGCCAGGGGTGTAACTAGCC
1._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
2._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
3._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
4._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
5._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
6._GC-01-008-1-08
ATTTGT_CGCCAGGGGTGTAACTAGCC
7._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
8._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
9._EQX_69_[EQX]
AT___CG_AGGG__AA___
10._EQX_69_[EQX]
AT___CG_AGGG__AA___
11._EQX_69_[EQX]
AT___CG_AGGG__AA___
12._EQX_69_[EQX]
AT___CG_AGGG__AA___
13._EQX_69_[EQX]
AT___CG_AGGG__AA___
14._EQX_69_[EQX]
AT___CG_AGGG__AA___
15._EQX_69_[EQX]
AT___CG_AGGG__AA___
16._EQX_69_[EQX]
AT___CG_AGGG__AA___
17._EQX_69_[EQX]
AT___CG_AGGG__AA___
18._RUQ_100
___GGCGCCAGGG__AACT__
19._RUQ_100
AT___CG_AGGG__AG___
20._RUQ_100
____CG_AG____CT__
21._GC-01-8-1-8
ATAAACGGCGCCAGCCACACAAAGAGGG
22._RUQ_100
ATAAACGGCGCCAGCCACACAAAGAGGG
 4344454647484950515253545556
_Input profile
GGTTTTGGAAAACCACAGAAGTTTCTCT
1._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
2._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
3._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
4._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
5._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
6._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
7._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
8._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
9._EQX_69_[EQX]
__TT_________CTCT
10._EQX_69_[EQX]
__TT_________CTCT
11._EQX_69_[EQX]
__TT_________CTCT
12._EQX_69_[EQX]
__TT_________CTCT
13._EQX_69_[EQX]
__TT_________CTCT
14._EQX_69_[EQX]
__TT_________CTCT
15._EQX_69_[EQX]
__TT_________CTCT
16._EQX_69_[EQX]
__TT_________CTCT
17._EQX_69_[EQX]
__TT_________CTCT
18._RUQ_100
GGTT__AA______TTCT_
19._RUQ_100
__TT_________CTCT
20._RUQ_100
____AA_________
21._GC-01-8-1-8
CC_AA_AAAAGG_AGAAACAAAGAG
22._RUQ_100
CC_AA_AAAAGG_AGAAACAAAGAG
 5758596061626364656667686970
_Input profile
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
1._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
2._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
3._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
4._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
5._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
6._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
7._GC-01-008-1-08
GTAGCCTTTTAAGGGGCCAAGTGGAGTT
8._GC-01-008-1-08
GTAGCCTTTT_GGGG_AAGTGGAGTT
9._EQX_69_[EQX]
__CC_TTAAGG_CCAAGTGG__
10._EQX_69_[EQX]
__CC_TTAAGG_CCAAGTGG__
11._EQX_69_[EQX]
__CC_TTAAGG_CCAAGTGG__
12._EQX_69_[EQX]
__CC_TTAAGG_CCAAGTGG__
13._EQX_69_[EQX]
__CC_TTAAGG_CCAAGTGG__
14._EQX_69_[EQX]
__CC_TTAAGG_CCAAGTGG__
15._EQX_69_[EQX]
__CC_TTAAGG_CCAAGTGG__
16._EQX_69_[EQX]
__CC_TTAAGG_CCAAGTGG__
17._EQX_69_[EQX]
__CC_TT_GG__AAGTGG__
18._RUQ_100
GT-CCTTTTAA_GGCCAAGTGGAG_
19._RUQ_100
__CC_TTAAGG_CCAAGTGG__
20._RUQ_100
_AG______CCAA_GGAG_
21._GC-01-8-1-8
ACAGGGAAAAAAGGGGCCAAACCCAG_
22._RUQ_100
ACAGGGAAAAAAGGGGCCAAACCCAG_
 7172737475767778798081828384
_Input profile
CGAACTAAAAACACGGCCCGCCAAACCT
1._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
2._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
3._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
4._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCC_ACCT
5._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
6._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
7._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
8._GC-01-008-1-08
CGAACTAAAAACACGGCCCGCCAAACCT
9._EQX_69_[EQX]
_AACT_____CCCG___CT
10._EQX_69_[EQX]
_AACT_____CCCG___CT
11._EQX_69_[EQX]
_AACT_____CCCG___CT
12._EQX_69_[EQX]
_AACT_____CCCG___CT
13._EQX_69_[EQX]
_AACT_____CCCG___CT
14._EQX_69_[EQX]
_AACT_____CCCG___CT
15._EQX_69_[EQX]
_AACT_____CCCG___CT
16._EQX_69_[EQX]
_AACT_____CCCG___CT
17._EQX_69_[EQX]
_AACT_____CCCG___CT
18._RUQ_100
________CCCG__ACCT
19._RUQ_100
_AACT_____CCCG___CT
20._RUQ_100
_AA______CCCG__AC_
21._GC-01-8-1-8
__AGAAAAACAC_CCCGGGAAACAG
22._RUQ_100
__AGAAAAACAC_CCCGGGAAACAG
 85868788899091929394    
_Input profile
TTCTCTAGCCCTTTTTAAGGX_XX_XX_XX_X
1._GC-01-008-1-08
TTCTCTAGCCCTTTTTAAGGX_XX_XX_XX_X
2._GC-01-008-1-08
TTCTCTAGCCCTTTTTAAGGX_XX_XX_XX_X
3._GC-01-008-1-08
TTCTCTAGCCCTTTTTAAGGX_XX_XX_XX_X
4._GC-01-008-1-08
TTCTCTAGCCCTTTTTAAGGX_XX_XX_XX_X
5._GC-01-008-1-08
TTCT_AGCCCTTTTTAAGGX_XX_XX_XX_X
6._GC-01-008-1-08
TTCTCTAGCCCTTTTTAAGGX_XX_XX_XX_X
7._GC-01-008-1-08
TTCTCT_CCCTTTTTAAGGX_XX_XX_XX_X
8._GC-01-008-1-08
TTCTCTAGCCCTTTTTAAGGX_XX_XX_XX_X
9._EQX_69_[EQX]
TTCT_AG_CTTTTT__X_XX_XX_XX_X
10._EQX_69_[EQX]
TTCT_AG_CTTTTT__X_XX_XX_XX_X
11._EQX_69_[EQX]
TTCT_AG_CTTTTT__X_XX_XX_XX_X
12._EQX_69_[EQX]
TTCT_AG_CTTTTT__X_XX_XX_XX_X
13._EQX_69_[EQX]
TTCT_AG_CTTTTT__X_XX_XX_XX_X
14._EQX_69_[EQX]
TTCT_AG_CTTTTT__X_XX_XX_XX_X
15._EQX_69_[EQX]
TTCT_AG_CTTTTT__X_XX_XX_XX_X
16._EQX_69_[EQX]
TTCT___CTTTTT__X_XX_XX_XX_X
17._EQX_69_[EQX]
TTCT_AG_CTTTTT__X_XX_XX_XX_X
18._RUQ_100
___AGCCCTTT___X_XX_XX_XX_X
19._RUQ_100
TTCT_AG_CTTTTT__X_XX_XX_XX_X
20._RUQ_100
_CT__CC_TT___X_XX_XX_XX_X
21._GC-01-8-1-8
AA_AG__AGAAAATTGGX_XX_XX_XX_X
22._RUQ_100
AA_AG__AGAAAATTGGX_XX_XX_XX_X

Input profile: EQX_69_[EQX] GC-01-008-1-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

1._EQX_69_[EQX] GC-01-008-1-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._EQX_69_[EQX] GC-01-008-1-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

3._EQX_69_[EQX] GC-01-008-1-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

5._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

9._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 2
 Dapeng Zhang, 2016

11._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 3
 Dapeng Zhang, 2016

12._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 12
 Dapeng Zhang, 2016

13._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 10 > F
 Dapeng Zhang, 2016

14._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 14 > F
 Dapeng Zhang, 2016

15._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 7 > FP
 Dapeng Zhang, 2016

16._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 16
 Dapeng Zhang, 2016

17._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 9 > FP
 Dapeng Zhang, 2016

18._EQX_69_[EQX] RUQ_100

97.6 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._EQX_69_[EQX] RUQ_100

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._EQX_69_[EQX] RUQ_100

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._EQX_69_[EQX] GC-01-8-1-8

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._EQX_69_[EQX] RUQ_100

53.8 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240