SNP Profiles of EQX-69   View Data

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 Key

 1234567891011121314
_Input profile
AACCTTCCGGAACTCTCTCTGGTTCCCT
1._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
2._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
3._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
4._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
5._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
6._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
7._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
8._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
9._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
10._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
11._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
12._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
13._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
14._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
15._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
16._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
17._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
18._RUQ_100
__-CC__TT_CT__TTCC_
19._RUQ_100
AACCCTCC____CTCTAG_CC_
20._RUQ_100
___CC__TT_______
21._GC-01-8-1-8
AACC_CCGGAA_AGAG_GGAAGGAG
22._RUQ_100
AACC_CCGGAA_AGAG_GGAAGGAG
 1516171819202122232425262728
_Input profile
ATACGGCCCCGGCCAATTAGATAACGCG
1._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
2._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
3._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
4._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
5._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
6._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
7._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
8._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
9._EQX_69_[EQX]
__GG__GG____ATAA_CG
10._EQX_69_[EQX]
__GG__GG____ATAA_CG
11._EQX_69_[EQX]
__GG__GG____ATAA_CG
12._EQX_69_[EQX]
__GG__GG____ATAA_CG
13._EQX_69_[EQX]
__GG__GG____ATAA_CG
14._EQX_69_[EQX]
__GG__GG____ATAA_CG
15._EQX_69_[EQX]
__GG__GG____ATAA_CG
16._EQX_69_[EQX]
__GG__GG____ATAA_CG
17._EQX_69_[EQX]
__GG__GG____ATAA_CG
18._RUQ_100
____CC____AG_AACCCG
19._RUQ_100
__GG__GG____ATAA_CG
20._RUQ_100
__GGCT_________CG
21._GC-01-8-1-8
ATACGGGG_GGGGAAAAAGATAACGCG
22._RUQ_100
ATACGGGG_GGGGAAAAAGATAACGCG
 2930313233343536373839404142
_Input profile
ATTTGTGGCGCCAGGGGTGTAACTAGCC
1._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
2._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
3._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
4._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
5._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
6._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
7._GC-01-008-1-08
ATTTGT_CGCCAGGGGTGTAACTAGCC
8._GC-01-008-1-08
ATTTGTGGCGCCAGGGGTGTAACTAGCC
9._EQX_69_[EQX]
AT___CG_AGGG__AA___
10._EQX_69_[EQX]
AT___CG_AGGG__AA___
11._EQX_69_[EQX]
AT___CG_AGGG__AA___
12._EQX_69_[EQX]
AT___CG_AGGG__AA___
13._EQX_69_[EQX]
AT___CG_AGGG__AA___
14._EQX_69_[EQX]
AT___CG_AGGG__AA___
15._EQX_69_[EQX]
AT___CG_AGGG__AA___
16._EQX_69_[EQX]
AT___CG_AGGG__AA___
17._EQX_69_[EQX]
AT___CG_AGGG__AA___
18._RUQ_100
___GGCGCCAGGG__AACT__
19._RUQ_100
AT___CG_AGGG__AG___
20._RUQ_100
____CG_AG____CT__
21._GC-01-8-1-8
ATAAACGGCGCCAGCCACACAAAGAGGG
22._RUQ_100
ATAAACGGCGCCAGCCACACAAAGAGGG
 4344454647484950515253545556
_Input profile
GGTTTTGGAAAACCACAGAAGTTTCTCT
1._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
2._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
3._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
4._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
5._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
6._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
7._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
8._GC-01-008-1-08
GGTTTTGGAAAACCACAGAAGTTTCTCT
9._EQX_69_[EQX]
__TT_________CTCT
10._EQX_69_[EQX]
__TT_________CTCT
11._EQX_69_[EQX]
__TT_________CTCT
12._EQX_69_[EQX]
__TT_________CTCT
13._EQX_69_[EQX]
__TT_________CTCT
14._EQX_69_[EQX]
__TT_________CTCT
15._EQX_69_[EQX]
__TT_________CTCT
16._EQX_69_[EQX]
__TT_________CTCT
17._EQX_69_[EQX]
__TT_________CTCT
18._RUQ_100
GGTT__AA______TTCT_
19._RUQ_100
__TT_________CTCT
20._RUQ_100
____AA_________
21._GC-01-8-1-8
CC_AA_AAAAGG_AGAAACAAAGAG
22._RUQ_100
CC_AA_AAAAGG_AGAAACAAAGAG
 5758596061626364656667686970
_Input profile
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
1._GC-01-008-1-08
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
2._GC-01-008-1-08
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
3._GC-01-008-1-08
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
4._GC-01-008-1-08
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
5._GC-01-008-1-08
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
6._GC-01-008-1-08
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
7._GC-01-008-1-08
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
8._GC-01-008-1-08
GTAGCCTTTTGGGGAAGTGGAGTTCGAA
9._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
10._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
11._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
12._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
13._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
14._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
15._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
16._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
17._EQX_69_[EQX]
__CC_TTGG_AAGTGG___AA
18._RUQ_100
GT-CCTTTT_GGAAGTGGAG___
19._RUQ_100
__CC_TTGG_AAGTGG___AA
20._RUQ_100
_AG_____AA_GGAG__AA
21._GC-01-8-1-8
ACAGGGAAAAGGGGAAACCCAG___
22._RUQ_100
ACAGGGAAAAGGGGAAACCCAG___
 7172737475767778798081828384
_Input profile
CTAAAAACACGGCCCGCCAAACCTTTCT
1._GC-01-008-1-08
CTAAAAACACGGCCCGCCAAACCTTTCT
2._GC-01-008-1-08
CTAAAAACACGGCCCGCCAAACCTTTCT
3._GC-01-008-1-08
CTAAAAACACGGCCCGCCAAACCTTTCT
4._GC-01-008-1-08
CTAAAAACACGGCCCGCCAAACCTTTCT
5._GC-01-008-1-08
CTAAAAACACGGCCCGCC_ACCTTTCT
6._GC-01-008-1-08
CTAAAAACACGGCCCGCCAAACCTTTCT
7._GC-01-008-1-08
CTAAAAACACGGCCCGCCAAACCTTTCT
8._GC-01-008-1-08
CTAAAAACACGGCCCGCCAAACCTTTCT
9._EQX_69_[EQX]
CT_____CCCG___CTTTCT
10._EQX_69_[EQX]
CT_____CCCG___CTTTCT
11._EQX_69_[EQX]
CT_____CCCG___CTTTCT
12._EQX_69_[EQX]
CT_____CCCG___CTTTCT
13._EQX_69_[EQX]
CT_____CCCG___CTTTCT
14._EQX_69_[EQX]
CT_____CCCG___CTTTCT
15._EQX_69_[EQX]
CT_____CCCG___CTTTCT
16._EQX_69_[EQX]
CT_____CCCG___CTTTCT
17._EQX_69_[EQX]
CT_____CCCG___CTTTCT
18._RUQ_100
______CCCG__ACCT__
19._RUQ_100
CT_____CCCG___CTTTCT
20._RUQ_100
______CCCG__AC__CT
21._GC-01-8-1-8
AGAAAAACAC_CCCGGGAAACAGAA_
22._RUQ_100
AGAAAAACAC_CCCGGGAAACAGAA_
 8586878889909192      
_Input profile
CTAGCCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-008-1-08
CTAGCCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-008-1-08
CTAGCCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-008-1-08
CTAGCCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-008-1-08
CTAGCCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-008-1-08
CTAGCCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-008-1-08
_AGCCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-008-1-08
CTAGCCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-008-1-08
CT_CCCTTTTTAAGGX_XX_XX_XX_XX_XX_X
9._EQX_69_[EQX]
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
10._EQX_69_[EQX]
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
11._EQX_69_[EQX]
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
12._EQX_69_[EQX]
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
13._EQX_69_[EQX]
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
14._EQX_69_[EQX]
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
15._EQX_69_[EQX]
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
16._EQX_69_[EQX]
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
17._EQX_69_[EQX]
___CTTTTT__X_XX_XX_XX_XX_XX_X
18._RUQ_100
_AGCCCTTT___X_XX_XX_XX_XX_XX_X
19._RUQ_100
_AG_CTTTTT__X_XX_XX_XX_XX_XX_X
20._RUQ_100
__CC_TT___X_XX_XX_XX_XX_XX_X
21._GC-01-8-1-8
AG__AGAAAATTGGX_XX_XX_XX_XX_XX_X
22._RUQ_100
AG__AGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: EQX_69_[EQX] GC-01-008-1-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

1._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

4._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._EQX_69_[EQX] GC-01-008-1-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._EQX_69_[EQX] GC-01-008-1-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._EQX_69_[EQX] GC-01-008-1-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._EQX_69_[EQX] GC-01-008-1-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 9 > FP
 Dapeng Zhang, 2016

10._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 2
 Dapeng Zhang, 2016

12._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 3
 Dapeng Zhang, 2016

13._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 12
 Dapeng Zhang, 2016

14._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 10 > F
 Dapeng Zhang, 2016

15._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 14 > F
 Dapeng Zhang, 2016

16._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 7 > FP
 Dapeng Zhang, 2016

17._EQX_69_[EQX]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 16
 Dapeng Zhang, 2016

18._EQX_69_[EQX] RUQ_100

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._EQX_69_[EQX] RUQ_100

96.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._EQX_69_[EQX] RUQ_100

95 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._EQX_69_[EQX] GC-01-8-1-8

52.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._EQX_69_[EQX] RUQ_100

52.6 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP25 63TcSNP364 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240