SNP Profiles of EQX-69   View Data

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 Key

 1234567891011121314
_Input profile
AACCTTCCGGAACTCTCTCTGGTTCCCT
1._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
2._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
3._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
4._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
5._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
6._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
7._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
8._GC-01-008-1-08
AACCTTCCGGAACTCTCTCTGGTTCCCT
9._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
10._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
11._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
12._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
13._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
14._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
15._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
16._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
17._EQX_69_[EQX]
AACCTTCC____CTCTGG_CC_
18._RUQ_100
__-CC__TT_CT__TTCC_
19._RUQ_100
AACCCTCC____CTCTAG_CC_
20._RUQ_100
___CC__TT_______
21._GC-01-8-1-8
AACC_CCGGAA_AGAG_GGAAGGAG
22._RUQ_100
AACC_CCGGAA_AGAG_GGAAGGAG
 1516171819202122232425262728
_Input profile
ATACGGCCCCGGCCAATTAGATAACGCG
1._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
2._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
3._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
4._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
5._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
6._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
7._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
8._GC-01-008-1-08
ATACGGCCCCGGCCAATTAGATAACGCG
9._EQX_69_[EQX]
__GG__GG____ATAA_CG
10._EQX_69_[EQX]
__GG__GG____ATAA_CG
11._EQX_69_[EQX]
__GG__GG____ATAA_CG
12._EQX_69_[EQX]
__GG__GG____ATAA_CG
13._EQX_69_[EQX]
__GG__GG____ATAA_CG
14._EQX_69_[EQX]
__GG__GG____ATAA_CG
15._EQX_69_[EQX]
__GG__GG____ATAA_CG
16._EQX_69_[EQX]
__GG__GG____ATAA_CG
17._EQX_69_[EQX]
__GG__GG____ATAA_CG
18._RUQ_100
____CC____AG_AACCCG
19._RUQ_100
__GG__GG____ATAA_CG
20._RUQ_100
__GGCT_________CG
21._GC-01-8-1-8
ATACGGGG_GGGGAAAAAGATAACGCG
22._RUQ_100
ATACGGGG_GGGGAAAAAGATAACGCG
 2930313233343536373839404142
_Input profile
ATTTGTCGCCAGGGGTGTAACTAGCCGG
1._GC-01-008-1-08
ATTTGTCGCCAGGGGTGTAACTAGCCGG
2._GC-01-008-1-08
ATTTGTCGCCAGGGGTGTAACTAGCCGG
3._GC-01-008-1-08
ATTTGTCGCCAGGGGTGTAACTAGCCGG
4._GC-01-008-1-08
ATTTGTCGCCAGGGGTGTAACTAGCCGG
5._GC-01-008-1-08
ATTTGTCGCCAGGGGTGTAACTAGCCGG
6._GC-01-008-1-08
ATTTGTCGCCAGGGGTGTAACTAGCCGG
7._GC-01-008-1-08
ATTTGTCGCCAGGGGTGTAACTAGCCGG
8._GC-01-008-1-08
ATTTGTCGCCAGGGGTGTAACTAGCCGG
9._EQX_69_[EQX]
AT__CG_AGGG__AA____
10._EQX_69_[EQX]
AT__CG_AGGG__AA____
11._EQX_69_[EQX]
AT__CG_AGGG__AA____
12._EQX_69_[EQX]
AT__CG_AGGG__AA____
13._EQX_69_[EQX]
AT__CG_AGGG__AA____
14._EQX_69_[EQX]
AT__CG_AGGG__AA____
15._EQX_69_[EQX]
AT__CG_AGGG__AA____
16._EQX_69_[EQX]
AT__CG_AGGG__AA____
17._EQX_69_[EQX]
AT__CG_AGGG__AA____
18._RUQ_100
___CGCCAGGG__AACT__GG
19._RUQ_100
AT__CG_AGGG__AG____
20._RUQ_100
___CG_AG____CT___
21._GC-01-8-1-8
ATAAACCGCCAGCCACACAAAGAGGGCC
22._RUQ_100
ATAAACCGCCAGCCACACAAAGAGGGCC
 4344454647484950515253545556
_Input profile
TTTTGGAAAACCACAGAAGTTTCTCTGT
1._GC-01-008-1-08
TTTTGGAAAACCACAGAAGTTTCTCTGT
2._GC-01-008-1-08
TTTTGGAAAACCACAGAAGTTTCTCTGT
3._GC-01-008-1-08
TTTTGGAAAACCACAGAAGTTTCTCTGT
4._GC-01-008-1-08
TTTTGGAAAACCACAGAAGTTTCTCTGT
5._GC-01-008-1-08
TTTTGGAAAACCACAGAAGTTTCTCTGT
6._GC-01-008-1-08
TTTTGGAAAACCACAGAAGTTTCTCTGT
7._GC-01-008-1-08
TTTTGGAAAACCACAGAAGTTTCTCTGT
8._GC-01-008-1-08
TTTTGGAAAACCACAGAAGTTTCTCTGT
9._EQX_69_[EQX]
_TT_________CTCT_
10._EQX_69_[EQX]
_TT_________CTCT_
11._EQX_69_[EQX]
_TT_________CTCT_
12._EQX_69_[EQX]
_TT_________CTCT_
13._EQX_69_[EQX]
_TT_________CTCT_
14._EQX_69_[EQX]
_TT_________CTCT_
15._EQX_69_[EQX]
_TT_________CTCT_
16._EQX_69_[EQX]
_TT_________CTCT_
17._EQX_69_[EQX]
_TT_________CTCT_
18._RUQ_100
TT__AA______TTCT_GT
19._RUQ_100
_TT_________CTCT_
20._RUQ_100
___AA__________
21._GC-01-8-1-8
_AA_AAAAGG_AGAAACAAAGAGAC
22._RUQ_100
_AA_AAAAGG_AGAAACAAAGAGAC
 5758596061626364656667686970
_Input profile
AGCCTTTTAAGGGGCCAAGTGGAGTTCG
1._GC-01-008-1-08
AGCCTTTTAAGGGGCCAAGTGGAGTTCG
2._GC-01-008-1-08
AGCCTTTTAAGGGGCCAAGTGGAGTTCG
3._GC-01-008-1-08
AGCCTTTTAAGGGGCCAAGTGGAGTTCG
4._GC-01-008-1-08
AGCCTTTTAAGGGGCCAAGTGGAGTTCG
5._GC-01-008-1-08
AGCCTTTTAAGGGGCCAAGTGGAGTTCG
6._GC-01-008-1-08
AGCCTTTTAAGGGGCCAAGTGGAGTTCG
7._GC-01-008-1-08
AGCCTTTTAAGGGGCCAAGTGGAGTTCG
8._GC-01-008-1-08
AGCCTTTT_GGGG_AAGTGGAGTTCG
9._EQX_69_[EQX]
_CC_TTAAGG_CCAAGTGG___
10._EQX_69_[EQX]
_CC_TTAAGG_CCAAGTGG___
11._EQX_69_[EQX]
_CC_TTAAGG_CCAAGTGG___
12._EQX_69_[EQX]
_CC_TTAAGG_CCAAGTGG___
13._EQX_69_[EQX]
_CC_TTAAGG_CCAAGTGG___
14._EQX_69_[EQX]
_CC_TTAAGG_CCAAGTGG___
15._EQX_69_[EQX]
_CC_TTAAGG_CCAAGTGG___
16._EQX_69_[EQX]
_CC_TTAAGG_CCAAGTGG___
17._EQX_69_[EQX]
_CC_TT_GG__AAGTGG___
18._RUQ_100
-CCTTTTAA_GGCCAAGTGGAG__
19._RUQ_100
_CC_TTAAGG_CCAAGTGG___
20._RUQ_100
AG______CCAA_GGAG__
21._GC-01-8-1-8
AGGGAAAAAAGGGGCCAAACCCAG__
22._RUQ_100
AGGGAAAAAAGGGGCCAAACCCAG__
 7172737475767778798081828384
_Input profile
AACTAAAAACACGGCCCGCCAAACCTTT
1._GC-01-008-1-08
AACTAAAAACACGGCCCGCCAAACCTTT
2._GC-01-008-1-08
AACTAAAAACACGGCCCGCCAAACCTTT
3._GC-01-008-1-08
AACTAAAAACACGGCCCGCCAAACCTTT
4._GC-01-008-1-08
AACTAAAAACACGGCCCGCCAAACCTTT
5._GC-01-008-1-08
AACTAAAAACACGGCCCGCC_ACCTTT
6._GC-01-008-1-08
AACTAAAAACACGGCCCGCCAAACCTTT
7._GC-01-008-1-08
AACTAAAAACACGGCCCGCCAAACCTTT
8._GC-01-008-1-08
AACTAAAAACACGGCCCGCCAAACCTTT
9._EQX_69_[EQX]
AACT_____CCCG___CTTT
10._EQX_69_[EQX]
AACT_____CCCG___CTTT
11._EQX_69_[EQX]
AACT_____CCCG___CTTT
12._EQX_69_[EQX]
AACT_____CCCG___CTTT
13._EQX_69_[EQX]
AACT_____CCCG___CTTT
14._EQX_69_[EQX]
AACT_____CCCG___CTTT
15._EQX_69_[EQX]
AACT_____CCCG___CTTT
16._EQX_69_[EQX]
AACT_____CCCG___CTTT
17._EQX_69_[EQX]
AACT_____CCCG___CTTT
18._RUQ_100
_______CCCG__ACCT_
19._RUQ_100
AACT_____CCCG___CTTT
20._RUQ_100
AA______CCCG__AC__
21._GC-01-8-1-8
_AGAAAAACAC_CCCGGGAAACAGAA
22._RUQ_100
_AGAAAAACAC_CCCGGGAAACAGAA
 858687888990919293     
_Input profile
CTCTAGCCCTTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-008-1-08
CTCTAGCCCTTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-008-1-08
CTCTAGCCCTTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-008-1-08
CTCTAGCCCTTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-008-1-08
CTCTAGCCCTTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-008-1-08
CTCTAGCCCTTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-008-1-08
CT_AGCCCTTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-008-1-08
CTCT_CCCTTTTTAAGGX_XX_XX_XX_XX_X
8._GC-01-008-1-08
CTCTAGCCCTTTTTAAGGX_XX_XX_XX_XX_X
9._EQX_69_[EQX]
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
10._EQX_69_[EQX]
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
11._EQX_69_[EQX]
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
12._EQX_69_[EQX]
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
13._EQX_69_[EQX]
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
14._EQX_69_[EQX]
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
15._EQX_69_[EQX]
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
16._EQX_69_[EQX]
CT___CTTTTT__X_XX_XX_XX_XX_X
17._EQX_69_[EQX]
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
18._RUQ_100
__AGCCCTTT___X_XX_XX_XX_XX_X
19._RUQ_100
CT_AG_CTTTTT__X_XX_XX_XX_XX_X
20._RUQ_100
CT__CC_TT___X_XX_XX_XX_XX_X
21._GC-01-8-1-8
_AG__AGAAAATTGGX_XX_XX_XX_XX_X
22._RUQ_100
_AG__AGAAAATTGGX_XX_XX_XX_XX_X

Input profile: EQX_69_[EQX] GC-01-008-1-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

4._EQX_69_[EQX] GC-01-008-1-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._EQX_69_[EQX] GC-01-008-1-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._EQX_69_[EQX] GC-01-008-1-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

9._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 2
 Dapeng Zhang, 2016

11._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 3
 Dapeng Zhang, 2016

12._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 12
 Dapeng Zhang, 2016

13._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 10 > F
 Dapeng Zhang, 2016

14._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 14 > F
 Dapeng Zhang, 2016

15._EQX_69_[EQX]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 7 > FP
 Dapeng Zhang, 2016

16._EQX_69_[EQX]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 16
 Dapeng Zhang, 2016

17._EQX_69_[EQX]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1106 9 > FP
 Dapeng Zhang, 2016

18._EQX_69_[EQX] RUQ_100

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._EQX_69_[EQX] RUQ_100

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._EQX_69_[EQX] RUQ_100

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._EQX_69_[EQX] GC-01-8-1-8

53.2 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._EQX_69_[EQX] RUQ_100

53.2 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240