SNP Profiles of PA 137 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTACCCAGCCAAGGAGACCT
1._PA_137_[PER]___
GGATACGTCTACCCAGCCAAGGAGACCT
2._PA_137_[PER]___
____ACGT__AC__AG__AA__AGACCT
3._PA_137_[PER]___
____AC________AG________AC__
4._PA_137_[PER]___
GGATACGTCTACCCAGCCAAGGAGACCT
5._PA_137_[PER]___
GGATACGTCTACCCAGCCAAGGAGACCT
6._PA_137_[PER]___
GGATACGTCTAC__AGCCAAGGAGACCT
7._PA_137_[PER]___
GGATACGTCTAC__AGCCAAGGAGACCT
8._PA_137_[PER]___
GGATACGTCTAC__AGCCAAGGAGACCT
9._PA_137_[PER]___
____ACGTCTACCCAGCCAA__AGACCT
10._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
11._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
12._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
13._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
14._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
15._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
16._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
17._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
18._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
19._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
20._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
21._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
22._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
23._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
24._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
25._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
26._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
27._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
28._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
29._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
30._PA_137_[PER]___
____AC________AG________AA__
31._PA_137_[PER]___
GGATACGTCTACCGAG__AAGGAGACCT
32._PA_137_[PER]___
____AC__CTACGGAG__AA________
33._PA_137_[PER]___
GGATACACAGACGGAGGGAAGG__AC__
34._PA_137_[PER]___
GGATACACAGACGGAGGGAAGG__AC__
35._PA_137_[PER]___
GGATACACAGACGGAGGGAAGG__AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCGCCCTAAGGGGCCCTCGAACTAGCC
1._PA_137_[PER]___
GGCGCCCTAAGGGGCCCTCGAACTAGCC
2._PA_137_[PER]___
GGCG______GG__CC________AG__
3._PA_137_[PER]___
__CGCC__AAGGGG__________AG__
4._PA_137_[PER]___
GGCGCCTTAAGGGGCCCTCGAACTAGCC
5._PA_137_[PER]___
GGCGCCTTAAGGGGCCCTCGAACTAGCC
6._PA_137_[PER]___
GGCGCCTTAA__GGCCCTCGAACTAGCC
7._PA_137_[PER]___
GGCGCCTTAAGGGGCCCTCGAACTAGCC
8._PA_137_[PER]___
GGCGCCTTAAGGGGCCCTCGAACTAGCC
9._PA_137_[PER]___
GGCGCCTT__GGGGCC________AGCC
10._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
11._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
12._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
13._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
14._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
15._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
16._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
17._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
18._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
19._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
20._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
21._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
22._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
23._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
24._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
25._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
26._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
27._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
28._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
29._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
30._PA_137_[PER]___
__CGCC__AAGGGG__________AG__
31._PA_137_[PER]___
GGCG__TTAAGT__CCCTCGAACTAG__
32._PA_137_[PER]___
__CGCC______CCCC______CT__CC
33._PA_137_[PER]___
CCCGCCAA__CCCCGGAGCGAAAGAGGG
34._PA_137_[PER]___
CCCGCCAA__CCCCGGAGCGAAAGAGGG
35._PA_137_[PER]___
CCCGCCAA__CCCCGGAGCGAAAGAGGG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
1._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
2._PA_137_[PER]___
________________CT______X_XX_X
3._PA_137_[PER]___
GG__CC__TT________CC____X_XX_X
4._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
5._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
6._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
7._PA_137_[PER]___
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
8._PA_137_[PER]___
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
9._PA_137_[PER]___
________TT______CTCCGG__X_XX_X
10._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
11._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
12._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
13._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
14._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
15._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
16._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
17._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
18._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
19._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
20._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
21._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
22._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
23._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
24._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
25._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
26._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
27._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
28._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
29._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
30._PA_137_[PER]___
GG__CC__TT________CC____X_XX_X
31._PA_137_[PER]___
GGAA__CCGTCTACTTCTCGAGCCX_XX_X
32._PA_137_[PER]___
__________________GG____X_XX_X
33._PA_137_[PER]___
GGAA____AAAGACAAAGGGGGGGX_XX_X
34._PA_137_[PER]___
GGAA____AAAGACAAAGGGGGGGX_XX_X
35._PA_137_[PER]___
GGAA____AAAGACAAAGGGGGGGX_XX_X

Input profile: PA_137_[PER] RUQ_36

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._PA_137_[PER] RUQ_1081

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER] RUQ_36

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_137_[PER] RUQ_1081

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._PA_137_[PER] RUQ_1081

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_137_[PER]

98.8 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

6._PA_137_[PER]

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

7._PA_137_[PER]

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

8._PA_137_[PER]

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_1081

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

21._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

23._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

24._PA_137_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

25._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_36

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

31._PA_137_[PER] RUQ_36

91.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

76.9 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

48.6 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

48.6 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520