SNP Profiles of PA 137 [PER]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTACCGAGAAGGAGACCTGG
1._PA_137_[PER]___
____ACGT__AC__AGAA__AGACCTGG
2._PA_137_[PER]___
GGATACGTCTAC__AGAAGGAGACCTGG
3._PA_137_[PER]___
GGATACGTCTAC__AGAAGGAGACCTGG
4._PA_137_[PER]___
GGATACGTCTAC__AGAAGGAGACCTGG
5._PA_137_[PER]___
GGATACGTCTACCCAGAAGGAGACCTGG
6._PA_137_[PER]___
GGATACGTCTACCCAGAAGGAGACCTGG
7._PA_137_[PER]___
GGATACGTCTACCCAGAAGGAGACCTGG
8._PA_137_[PER]___
GGATACGTCTACCCAGAAGGAGACCTGG
9._PA_137_[PER]___
____AC__CTACGGAGAA__________
10._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
11._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
12._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
13._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
14._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
15._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
16._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
17._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
18._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
19._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
20._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
21._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
22._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
23._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
24._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
25._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
26._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
27._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
28._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
29._PA_137_[PER]___
GGATACGTCTAACCAGAAGGAGACCTGG
30._PA_137_[PER]___
____ACGTCTACCCAGAA__AGACCTGG
31._PA_137_[PER]___
____AC________AG______AC____
32._PA_137_[PER]___
____AC________AG______AA____
33._PA_137_[PER]___
GGATACACAGACGGAGAAGG__AC__CC
34._PA_137_[PER]___
GGATACACAGACGGAGAAGG__AC__CC
35._PA_137_[PER]___
GGATACACAGACGGAGAAGG__AC__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGTTAAGTCCCTCGAACTAGGGAACCGT
1._PA_137_[PER]___
CG____GGCC________AG________
2._PA_137_[PER]___
CGTTAA__CCCTCGAACTAGGGAACCTT
3._PA_137_[PER]___
CGTTAAGGCCCTCGAACTAGGGAACCTT
4._PA_137_[PER]___
CGTTAAGGCCCTCGAACTAGGGAACCTT
5._PA_137_[PER]___
CGTTAAGGCCCTCGAACTAGGGAACCTT
6._PA_137_[PER]___
CGTTAAGGCCCTCGAACTAGGGAACCTT
7._PA_137_[PER]___
CGCTAAGGCCCTCGAACTAGGGAACCTT
8._PA_137_[PER]___
CGCTAAGGCCCTCGAACTAGGGAACCTT
9._PA_137_[PER]___
CG______CC______CT__________
10._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
11._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
12._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
13._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
14._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
15._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
16._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
17._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
18._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
19._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
20._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
21._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
22._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
23._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
24._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
25._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
26._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
27._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
28._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
29._PA_137_[PER]___
CGTTAGGGCCCTCGAACTAGGGAACCTT
30._PA_137_[PER]___
CGTT__GGCC________AG______TT
31._PA_137_[PER]___
CG__AAGG__________AGGG____TT
32._PA_137_[PER]___
CG__AAGG__________AGGG____TT
33._PA_137_[PER]___
CGAA__CCGGAGCGAAAGAGGGAA__AA
34._PA_137_[PER]___
CGAA__CCGGAGCGAAAGAGGGAA__AA
35._PA_137_[PER]___
CGAA__CCGGAGCGAAAGAGGGAA__AA
 29 30 31 32 33 34 35        
_Input profile
CTACTTCTCGAGCCX_XX_XX_XX_XX_XX_XX_X
1._PA_137_[PER]___
______CT______X_XX_XX_XX_XX_XX_XX_X
2._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
3._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
4._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
5._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
6._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
7._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
8._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
9._PA_137_[PER]___
________GG____X_XX_XX_XX_XX_XX_XX_X
10._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
11._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
12._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
13._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
14._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
15._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
16._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
17._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
18._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
19._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
20._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
21._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
22._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
23._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
24._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
25._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
26._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
27._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
28._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
29._PA_137_[PER]___
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
30._PA_137_[PER]___
______CTCCGG__X_XX_XX_XX_XX_XX_XX_X
31._PA_137_[PER]___
________CC____X_XX_XX_XX_XX_XX_XX_X
32._PA_137_[PER]___
________CC____X_XX_XX_XX_XX_XX_XX_X
33._PA_137_[PER]___
AGACAAAGGGGGGGX_XX_XX_XX_XX_XX_XX_X
34._PA_137_[PER]___
AGACAAAGGGGGGGX_XX_XX_XX_XX_XX_XX_X
35._PA_137_[PER]___
AGACAAAGGGGGGGX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_137_[PER] RUQ_36

 
 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._PA_137_[PER] RUQ_36

96.4 %
14 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER]

95.5 %
33 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

3._PA_137_[PER]

94.1 %
34 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

94.1 %
34 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] RUQ_1081

92.9 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_137_[PER]

92.9 %
35 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

7._PA_137_[PER] RUQ_36

91.4 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_137_[PER] RUQ_1081

91.4 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_137_[PER] PA137[PER]

90 %
10 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

10._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

21._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

23._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

24._PA_137_[PER]

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

25._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_1081

87.5 %
20 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._PA_137_[PER] RUQ_1081

85 %
10 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._PA_137_[PER] RUQ_36

80 %
10 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

33._PA_137_[PER] RUQ_36

53.2 %
31 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

53.2 %
31 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

53.2 %
31 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP619 17TcSNP645 18TcSNP723 19TcSNP891 20TcSNP917
21TcSNP929 22TcSNP953 23TcSNP994 24TcSNP998 25TcSNP1062
26TcSNP1075 27TcSNP1165 28TcSNP1253 29TcSNP1270 30TcSNP1350
31TcSNP1414 32TcSNP1442 33TcSNP1458 34TcSNP1484 35TcSNP1520