SNP Profiles of UF712 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
1._RUQ_1638	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
2._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
3._RUQ_1683	_	_	CC	GG	TT	CC	CC	AA	CC	TT	_	GG	AA	CC
4._RUQ_1638	_	_	CC	GG	TT	CC	CC	AA	CC	TT	_	GG	AA	CC
5._RUQ_1683	_	_	CC	_	_	_	_	AA	_	_	_	_	AA	_
6._UF_712	CC	AA	CC	GG	TT	CC	CC	_	CC	TT	AA	GG	AA	CC
7._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
8._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
9._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
10._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
11._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
12._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
13._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
14._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
15._RUQ_1683	CC	AA	CC	CC	AA	CC	GG	AA	GG	TT	AA	_	AA	_
16._MITC-000350	CC	AA	CC	CC	AA	CC	GG	AA	GG	TT	AA	_	AA	_
17._MITC-000039	CC	AA	CC	CC	AA	CC	GG	AA	GG	TT	AA	_	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	GG	CC	CT	GG	GG	GG	TT	CC	GG	TT	TT	AA	CC
1._RUQ_1638	GG	GG	CC	CT	GG	GG	GG	TT	CC	GG	TT	TT	AA	CC
2._UF_712	GG	GG	CC	CT	GG	GG	GG	TT	CC	_	TT	TT	AA	CC
3._RUQ_1683	GG	GG	CC	CT	_	GG	GG	TT	_	_	_	_	AA	CC
4._RUQ_1638	GG	GG	CC	CT	_	GG	GG	TT	_	_	_	_	AA	CC
5._RUQ_1683	_	GG	_	_	GG	GG	GG	_	_	_	_	_	AA	_
6._UF_712	GG	GG	TT	CT	GG	GG	GG	TT	CC	_	TT	TT	AA	CC
7._GC-01-089-5-06	GG	GG	CC	CT	AA	GG	GG	TT	CC	GG	TT	TT	AA	CC
8._GC-01-089-5-06	GG	GG	CC	CT	AA	GG	GG	TT	CC	GG	TT	TT	AA	CC
9._GC-01-089-5-06	GG	GG	CC	CT	AA	GG	GG	TT	CC	GG	TT	TT	AA	CC
10._UF_712	GG	GG	CC	CT	AA	GG	GG	TT	CC	GG	TT	TT	AA	CC
11._UF_712	GG	GG	CC	CT	AA	GG	GG	TT	CC	GG	TT	TT	AA	CC
12._UF_712	GG	GG	CC	CT	AA	GG	GG	TT	CC	GG	TT	TT	AA	CC
13._GC-01-089-5-06	GG	GG	CC	CT	AA	GG	GG	TT	CC	GG	TT	TT	AA	CC
14._UF_712	GG	GG	CC	CT	AA	GG	GG	TT	CC	GG	TT	TT	AA	CC
15._RUQ_1683	CC	GG	CC	AG	_	CC	CC	AA	GG	GG	TT	AA	AA	GG
16._MITC-000350	CC	GG	CC	AG	_	CC	CC	AA	GG	GG	TT	AA	AA	GG
17._MITC-000039	CC	GG	CC	AG	_	CC	CC	AA	GG	GG	TT	AA	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AT	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X
1._RUQ_1638	GG	AT	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X
2._UF_712	GG	AT	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X
3._RUQ_1683	_	_	_	_	GG	_	_	_	TT	CC	GG	_	X_X	X_X
4._RUQ_1638	_	_	_	_	GG	_	_	_	TT	CC	GG	_	X_X	X_X
5._RUQ_1683	GG	_	CC	_	GG	_	_	_	_	CC	_	_	X_X	X_X
6._UF_712	GG	AT	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X
7._GC-01-089-5-06	GG	TT	CC	CC	GG	TT	_	CC	TT	CC	GG	CC	X_X	X_X
8._GC-01-089-5-06	GG	TT	CC	CC	GG	TT	_	CC	TT	CC	GG	CC	X_X	X_X
9._GC-01-089-5-06	GG	TT	CC	CC	GG	TT	_	CC	TT	CC	GG	CC	X_X	X_X
10._UF_712	GG	TT	CC	CC	GG	TT	_	CC	TT	CC	GG	CC	X_X	X_X
11._UF_712	GG	TT	CC	CC	GG	TT	_	CC	TT	CC	GG	CC	X_X	X_X
12._UF_712	GG	TT	CC	CC	GG	TT	_	CC	TT	CC	GG	CC	X_X	X_X
13._GC-01-089-5-06	GG	TT	CC	CC	GG	TT	_	CC	TT	_	GG	CC	X_X	X_X
14._UF_712	GG	TT	CC	CC	GG	TT	_	CC	TT	_	GG	CC	X_X	X_X
15._RUQ_1683	GG	AT	_	_	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X
16._MITC-000350	GG	AT	_	_	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X
17._MITC-000039	GG	AT	_	_	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X

Input profile: UF_712 RUQ_1638

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._UF_712 RUQ_1638

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._UF_712

identical
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

3._UF_712 RUQ_1683

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._UF_712 RUQ_1638

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._UF_712 RUQ_1683

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

6._UF_712

97.4 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

7._UF_712 GC-01-089-5-06

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._UF_712 GC-01-089-5-06

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._UF_712 GC-01-089-5-06

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._UF_712

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._UF_712

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

12._UF_712

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

13._UF_712 GC-01-089-5-06

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._UF_712

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_712 MITC-000350

48.6 %
35 shared markers

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USDA-SHRS, United States of America

17._UF_712 MITC-000039

48.6 %
35 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520