SNP Profiles of UF676 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
1._RUQ_56	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
2._UF_676	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
3._RUQ_56	_	_	AC	_	CT	AC	CG	AG	_	AT	_	_	_	_
4._GC-08-080-2-03	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
5._GC-08-080-2-03	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
6._GC-08-080-2-03	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
7._GC-08-080-2-03	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
8._UF_676	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
9._UF_676	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
10._UF_676	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
11._UF_676	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
12._UF_676	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
13._RUQ_56	_	_	AC	GT	CT	AC	CG	AG	CT	AT	_	AG	CC	CT
14._RUQ_56	_	_	AC	_	_	_	_	AG	_	_	_	_	AC	_
15._RUQ_56	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	CC	_
16._MITC-000064	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	CC	_
17._UF_676_Fld#_180_Plt#_2	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
1._RUQ_56	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
2._UF_676	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
3._RUQ_56	_	CC	AC	_	_	_	CG	CC	_	_	_	CT	_	CT
4._GC-08-080-2-03	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
5._GC-08-080-2-03	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
6._GC-08-080-2-03	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
7._GC-08-080-2-03	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
8._UF_676	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
9._UF_676	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
10._UF_676	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
11._UF_676	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
12._UF_676	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
13._RUQ_56	GT	CC	AA	CT	_	GT	CG	CC	_	_	_	_	AG	CT
14._RUQ_56	_	CC	AC	_	AG	GT	CG	_	_	_	_	_	AG	_
15._RUQ_56	AC	CC	AC	AG	_	AC	CG	GG	AA	GG	AA	AG	AG	AG
16._MITC-000064	AC	CC	AC	AG	_	AC	CG	GG	AA	GG	AA	AG	AG	AG
17._UF_676_Fld#_180_Plt#_2	AC	CC	AC	AG	_	AC	CG	GG	AA	GG	AA	AG	AG	AG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
1._RUQ_56	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
2._UF_676	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
3._RUQ_56	_	_	_	_	_	_	_	_	_	CG	_	_	X_X	X_X
4._GC-08-080-2-03	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
5._GC-08-080-2-03	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
6._GC-08-080-2-03	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
7._GC-08-080-2-03	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
8._UF_676	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
9._UF_676	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
10._UF_676	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
11._UF_676	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
12._UF_676	AA	AA	CT	CT	GT	CC	AA	TT	CT	GG	AG	CT	X_X	X_X
13._RUQ_56	_	_	_	_	GT	_	_	_	CT	CG	AG	_	X_X	X_X
14._RUQ_56	AA	_	CT	_	GT	_	_	_	_	CG	_	_	X_X	X_X
15._RUQ_56	AA	AA	_	_	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X
16._MITC-000064	AA	AA	_	_	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X
17._UF_676_Fld#_180_Plt#_2	AA	AA	_	_	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X

Input profile: UF_676

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._UF_676 RUQ_56

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._UF_676

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0245

Dapeng Zhang, 2016

3._UF_676 RUQ_56

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

4._UF_676 GC-08-080-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

5._UF_676 GC-08-080-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

6._UF_676 GC-08-080-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

7._UF_676 GC-08-080-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

8._UF_676

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 7 > FP

Dapeng Zhang, 2016

9._UF_676

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 5 > FP

Dapeng Zhang, 2016

10._UF_676

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 4 > FP

Dapeng Zhang, 2016

11._UF_676

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 3 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._UF_676

98.8 %
40 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 293 I-043

Dapeng Zhang, 2016

13._UF_676 RUQ_56

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._UF_676 RUQ_56

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

15._UF_676 RUQ_56

57.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_676 MITC-000064

57.1 %
35 shared markers

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USDA-SHRS, United States of America

17._UF_676 UF_676_Fld#_180_Plt#_2

57.1 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 180, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520