SNP Profiles of RB 47   View Data

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 Key

 1234567891011121314
_Input profile
GGAAACGGCCCCGGAACTAAGGAAACCC
1._GC-05-101-3-03
GGAAACGGCCCCGGAACTAAGGAAACCC
2._GC-05-101-3-03
GGAAACGGCCCCGGAACTAAGGAAACCC
3._GC-05-101-3-03
GGAAACGGCCCCGGAACTAAGGAAACCC
4._GC-05-161-4-14
GGAAACGGCCCCGGAACTAAGGAAACCC
5._GC-05-161-4-14
GGAAACGGCCCCGGAACTAAGGAAACCC
6._GC-05-161-4-14
GGAAACGGCCCCGGAACTAAGGAAACCC
7._GC-05-161-4-14
GGAAACGGCCCCGGAACTAAGGAAACCC
8._GC-05-161-4-14
GGAAACGGCCCCGGAACTAAGGAAACCC
9._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
10._GC-08-065-1-87
GGAAACGGCCCCGGAACTAAGGAAACCC
11._GC-08-065-1-87
GGAAACGGCCCCGGAACTAAGGAAACCC
12._GC-08-065-1-87
GGAAACGGCCCCGGAACTAAGGAAACCC
13._GC-08-065-1-87
GGAAACGGCCCCGGAACTAAGGAAACCC
14._GC-08-065-1-87
GGAAACGGCCCCGGAACTAAGGAAACCC
15._GC-08-065-1-87
GGAAACGGCCCCGGAACTAAGGAAACCC
16._GC-08-065-1-87
GGAAACGGCCCCGGAACTAAGGAAACCC
17._GC-08-065-1-87
GGAAACGGCCCCGGAACTAAGGAAACCC
18._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
19._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
20._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
21._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
22._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
23._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
24._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
25._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
26._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
27._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
28._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
29._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
30._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
31._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
32._GC-05-101-3-03
GGAAACGGCCCCGGAACTAA_AAACCC
33._GC-08-065-1-87
GGAAACGGCC_GGAACTAAGGAAACCC
34._GC-08-065-1-87
GGAAACGGCC_GGAACTAAGGAAACCC
35._GC-08-065-1-87
GGAAACGGCCCCGG_CTAAGGAAACCC
36._RB_47_[BRA]
GGAAACGGCCCCGG_CTAAGGAAACCC
37._RB_47_[BRA]
GGAAACGGCCCCGGAACTAA_AAACCC
38._RB_47_[BRA]
GGAAACGGCC_GGAACTAAGGAAACCC
39._RB_47_[BRA]
GGAAACGGCC_GGAACTAAGGAAACCC
40._GC-05-161-4-14
GGAAACGG_CCGGAACTAAGGAAACCC
41._RB_47_[BRA]
GGAAACGG_CCGGAACTAAGGAAACCC
42._RB_47_[BRA]
GGAAACGGCCCC_AACTAAGG_ACCC
43._RUQ_135
__ACGGCCCCGGAACTAA_AAACCC
44._GC-05-101-3-03
GGAAACGGCCCCGGAACTAAGGAAACCC
45._RB_47_[BRA]
GGAAACGGCCCCGGAACTAAGGAAACCC
46._RB_47_[BRA]
GGAAACGGCCAC_AACTAAGGAAACCC
47._GC-08-065-1-87
GGAAACGGCCAC_AACTAAGGAAACCC
48._RUQ_135
GGAAACGGCCCCGGAACTAAAGAAACCC
49._RUQ_135
__AC_CCCCCCAA_AA____
50._GC-05-101-3-3
GGAAACCCGGCCCCAAAGAAGG_AC_
 1516171819202122232425262728
_Input profile
GGGGCCCCAAGGGGTTCTCGAACCAACT
1._GC-05-101-3-03
GGGGCCCCAAGGGGTTCTCGAACCAACT
2._GC-05-101-3-03
GGGGCCCCAAGGGGTTCTCGAACCAACT
3._GC-05-101-3-03
GGGGCCCCAAGGGGTTCTCGAACCAACT
4._GC-05-161-4-14
GGGGCCCCAAGGGGTTCTCGAACCAACT
5._GC-05-161-4-14
GGGGCCCCAAGGGGTTCTCGAACCAACT
6._GC-05-161-4-14
GGGGCCCCAAGGGGTTCTCGAACCAACT
7._GC-05-161-4-14
GGGGCCCCAAGGGGTTCTCGAACCAACT
8._GC-05-161-4-14
GGGGCCCCAAGGGGTTCTCGAACCAACT
9._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
10._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
11._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
12._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
13._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
14._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
15._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
16._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
17._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
18._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
19._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
20._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
21._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
22._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
23._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
24._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
25._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
26._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
27._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
28._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
29._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
30._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
31._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
32._GC-05-101-3-03
GGGGCCCCAAGGGGTTCTCGAACCAACT
33._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
34._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
35._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
36._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
37._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
38._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
39._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
40._GC-05-161-4-14
GGGGCCCCAAGGGGTT_CGAACCAACT
41._RB_47_[BRA]
GGGGCCCCAAGGGGTT_CGAACCAACT
42._RB_47_[BRA]
_GGCCCCAAGGGGTTCTCG_CC__
43._RUQ_135
GGGGCCCC_GGGGTT____AA-
44._GC-05-101-3-03
GGGGCCCCAAGGGGTTCTCGATCCAACT
45._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGATCCAACT
46._RB_47_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
47._GC-08-065-1-87
GGGGCCCCAAGGGGTTCTCGAACCAACT
48._RUQ_135
GGGGCCCCAAGGGGTTCTCGAACCAACT
49._RUQ_135
_GGCC___CCTT___CC_CT
50._GC-05-101-3-3
CCGGCCGG_CCCCAAAGCGAAGGAAAG
 293031323334353637383940  
_Input profile
GGAATTTTGGTTAACCCCCCAACCX_XX_X
1._GC-05-101-3-03
GGAATTTTGGTTAACCCCCCAACCX_XX_X
2._GC-05-101-3-03
GGAATTTTGGTTAACCCCCCAACCX_XX_X
3._GC-05-101-3-03
GGAATTTTGGTTAACCCCCCAACCX_XX_X
4._GC-05-161-4-14
GGAATTTTGGTTAACCCCCCAACCX_XX_X
5._GC-05-161-4-14
GGAATTTTGGTTAACCCCCCAACCX_XX_X
6._GC-05-161-4-14
GGAATTTTGGTTAACCCCCCAACCX_XX_X
7._GC-05-161-4-14
GGAATTTTGGTTAACCCCCCAACCX_XX_X
8._GC-05-161-4-14
GGAATTTTGGTTAACCCCCCAACCX_XX_X
9._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
10._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
11._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
12._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
13._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
14._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
15._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
16._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
17._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
18._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
19._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
20._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
21._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
22._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
23._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
24._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
25._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
26._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
27._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
28._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
29._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
30._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
31._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
32._GC-05-101-3-03
GGAATTTTGGTTAACCCCCCAACCX_XX_X
33._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
34._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
35._GC-08-065-1-87
GGAATTTTGGTTAACCCCCCAACCX_XX_X
36._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
37._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
38._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
39._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
40._GC-05-161-4-14
GGAATTTTGGTTAACCCCCCAACCX_XX_X
41._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
42._RB_47_[BRA]
GGAA_TTGGTTAACCCCCC__X_XX_X
43._RUQ_135
____GG___CCCCAA_X_XX_X
44._GC-05-101-3-03
GGAATTTTGGTTAACCCCCCAACCX_XX_X
45._RB_47_[BRA]
GGAATTTTGGTTAACCCCCCAACCX_XX_X
46._RB_47_[BRA]
GGAATTTTGGTTAACTCCCCAACCX_XX_X
47._GC-08-065-1-87
GGAATTTTGGTTAACTCCCCAACCX_XX_X
48._RUQ_135
GGAACTCTGGTTAACCCCCCAGCCX_XX_X
49._RUQ_135
_________GG__X_XX_X
50._GC-05-101-3-3
GGAA__CCAAAAGGGG_AAGGX_XX_X

Input profile: RB_47_[BRA]

 
Mars Center for Cocoa Science, Brazil
Location: 8187 8
 Dapeng Zhang, 2016

1._RB_47_[BRA] GC-05-101-3-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._RB_47_[BRA] GC-05-101-3-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._RB_47_[BRA] GC-05-101-3-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._RB_47_[BRA] GC-05-161-4-14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

5._RB_47_[BRA] GC-05-161-4-14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._RB_47_[BRA] GC-05-161-4-14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._RB_47_[BRA] GC-05-161-4-14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._RB_47_[BRA] GC-05-161-4-14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 11
 Dapeng Zhang, 2016

10._RB_47_[BRA] GC-08-065-1-87

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._RB_47_[BRA] GC-08-065-1-87

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._RB_47_[BRA] GC-08-065-1-87

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._RB_47_[BRA] GC-08-065-1-87

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._RB_47_[BRA] GC-08-065-1-87

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._RB_47_[BRA] GC-08-065-1-87

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._RB_47_[BRA] GC-08-065-1-87

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._RB_47_[BRA] GC-08-065-1-87

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5303 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5303 3
 Dapeng Zhang, 2016

20._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5303 4
 Dapeng Zhang, 2016

21._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

22._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5414 3
 Dapeng Zhang, 2016

23._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5414 4
 Dapeng Zhang, 2016

24._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5414 5
 Dapeng Zhang, 2016

25._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5414 1 > FP
 Dapeng Zhang, 2016

26._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 3
 Dapeng Zhang, 2016

27._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 4
 Dapeng Zhang, 2016

28._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 5
 Dapeng Zhang, 2016

29._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 6
 Dapeng Zhang, 2016

30._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 7
 Dapeng Zhang, 2016

31._RB_47_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 9
 Dapeng Zhang, 2016

32._RB_47_[BRA] GC-05-101-3-03

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._RB_47_[BRA] GC-08-065-1-87

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

34._RB_47_[BRA] GC-08-065-1-87

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._RB_47_[BRA] GC-08-065-1-87

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

36._RB_47_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 10
 Dapeng Zhang, 2016

37._RB_47_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5303 5
 Dapeng Zhang, 2016

38._RB_47_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 1
 Dapeng Zhang, 2016

39._RB_47_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 2
 Dapeng Zhang, 2016

40._RB_47_[BRA] GC-05-161-4-14

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

41._RB_47_[BRA]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

42._RB_47_[BRA]

identical
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

43._RB_47_[BRA] RUQ_135

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

44._RB_47_[BRA] GC-05-101-3-03

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

45._RB_47_[BRA]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5303 2 > FP
 Dapeng Zhang, 2016

46._RB_47_[BRA]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8187 12
 Dapeng Zhang, 2016

47._RB_47_[BRA] GC-08-065-1-87

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

48._RB_47_[BRA] RUQ_135

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

49._RB_47_[BRA] RUQ_135

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

50._RB_47_[BRA] GC-05-101-3-3

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 3, Rep: 3, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520