SNP Profiles of PA 88 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
1._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
2._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
3._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
4._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
5._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
6._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
7._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
8._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
9._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
10._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
11._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
12._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
13._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
14._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
15._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
16._PA_88_[PER]___
__GGCGCTTTCCCCTTCCCCAAGGCCAG
17._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
18._PA_88_[PER]___
__GGCGCTTTCCCCTTCCCCAAGGCCAG
19._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
20._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
21._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
22._PA_88_[PER]___
__GGCGCT______TT________CCAG
23._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
24._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
25._PA_88_[PER]___
____CG________TT__CC__GG__AG
26._PA_88_[PER]___
____CG__________________CC__
27._PA_88_[PER]___
__AGGGCT__CCCTTTCC__AAAGCCAG
28._PA_88_[PER]___
CTAAGGTTTTACCCTTCCCTAAAGCCGG
29._PA_88_[PER]___
CTAAGGTTTTACCCTTCCCTAAAGCCGG
30._PA_88_[PER]___
GGGGCGAGAACCGGAA____AAGGGGAG
31._PA_88_[PER]___
GGGGCGAGAACCGGAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGTTCCGGGGAGCTACCGGTCTAA
1._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
2._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
3._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
4._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
5._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
6._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
7._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
8._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
9._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
10._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
11._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
12._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
13._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
14._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
15._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
16._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
17._PA_88_[PER]___
CTAACG__CCGGGGAGCTACCGGTCTAA
18._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
19._PA_88_[PER]___
CTAACG__CCGGGGAGCTACCGGTCTAA
20._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
21._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
22._PA_88_[PER]___
________CCGGGG__CTACCGGTCTAA
23._PA_88_[PER]___
CTAACGTTCCGGGGAACTACCGGTCTAA
24._PA_88_[PER]___
CTAACGTTCCGGGGAACTACCGGTCTAA
25._PA_88_[PER]___
__________GGGGAA__ACCG____AA
26._PA_88_[PER]___
CT______CCCC______ACCG______
27._PA_88_[PER]___
CTAACGTTCCGGGGAATTCCGGGGCTCC
28._PA_88_[PER]___
TTAACCTTCCCGGGGGCTACCCTTTTCC
29._PA_88_[PER]___
TTAACCTTCCCGGGGGCTACCCTTTTCC
30._PA_88_[PER]___
AGAACGAAGGCCCC__AGACCGAC__AA
31._PA_88_[PER]___
AGAACGAAGGCCCC__AGACCGAC__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCGGCCAACTGGACAAGGX_XX_X
1._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
2._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
3._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
4._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
5._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
6._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
7._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
8._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
9._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
10._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
11._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
12._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
13._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
14._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
15._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
16._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
17._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
18._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
19._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
20._PA_88_[PER]___
__GGAACCGGCCAACTGGACAAGGX_XX_X
21._PA_88_[PER]___
__GGAACCGGCCAACTGGACAAGGX_XX_X
22._PA_88_[PER]___
AA__AACCGGCCAACTGGAC____X_XX_X
23._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
24._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
25._PA_88_[PER]___
________GG________AC____X_XX_X
26._PA_88_[PER]___
____AA__GGGGAACT__AC____X_XX_X
27._PA_88_[PER]___
AAGGAACCAA__AC__GGACATGGX_XX_X
28._PA_88_[PER]___
AAGGAACTAACCAACCTTAATTGGX_XX_X
29._PA_88_[PER]___
AAGGAACTAACCAACCTTAATTGGX_XX_X
30._PA_88_[PER]___
__GGAAGGGGGGAAAGCCACAAGGX_XX_X
31._PA_88_[PER]___
__GGAAGGGGGGAAAGCCACAAGGX_XX_X

Input profile: PA_88_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 1313 3
 Dapeng Zhang, 2016

1._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

3._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 6 > FP
 Dapeng Zhang, 2016

7._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 16 > F
 Dapeng Zhang, 2016

8._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 11
 Dapeng Zhang, 2016

9._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 10
 Dapeng Zhang, 2016

10._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 8
 Dapeng Zhang, 2016

11._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 5
 Dapeng Zhang, 2016

12._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 2
 Dapeng Zhang, 2016

13._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

16._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 1 > FP
 Dapeng Zhang, 2016

17._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

18._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 4 > FP
 Dapeng Zhang, 2016

20._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 14
 Dapeng Zhang, 2016

21._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

22._PA_88_[PER] RUQ_34

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._PA_88_[PER] RUQ_34

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._PA_88_[PER]

98.8 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P50 299
 Dapeng Zhang, 2016

25._PA_88_[PER] RUQ_34

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.992

26._PA_88_[PER] PA88[PER]

84.6 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

27._PA_88_[PER]

78.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D677
 Dapeng Zhang, 2016

28._PA_88_[PER]

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 13
 Dapeng Zhang, 2016

29._PA_88_[PER] GC-01-058-3-13

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

30._PA_88_[PER] GC-01-58-3-13

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._PA_88_[PER] RUQ_34

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25