SNP Profiles of PA 137 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCTTTACCTTTCCAAGGCCAGCT
1._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
2._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
3._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
4._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
5._PA_137_[PER]___
__GGCCCT______TT______CCAG__
6._PA_137_[PER]___
______CT________________AG__
7._PA_137_[PER]___
____CC________TT____GG__AG__
8._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
9._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
10._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
11._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
12._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
13._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
14._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
15._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
16._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
17._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
18._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
19._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
20._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
21._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
22._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
23._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
24._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
25._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
26._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
27._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
28._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
29._PA_137_[PER]___
CCGGCCCTTTACCTTTCCAAGGCCAGCT
30._PA_137_[PER]___
____CC________TT____GG__AG__
31._PA_137_[PER]___
CCAGCGCTTTACCTGTCCAAGG__AGCT
32._PA_137_[PER]___
____GG________________CC__CT
33._PA_137_[PER]___
GGGGGGAGAAACAGAA__AAGGGGAGAG
34._PA_137_[PER]___
GGGGGGAGAAACAGAA__AAGGGGAGAG
35._PA_137_[PER]___
GGGGGGAGAAACAGAA__AAGGGGAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACGCTCCGGGGAATTCCCGGGCTACAG
1._PA_137_[PER]___
AACGCTCCGGGGAATTCCCGGGCTACAG
2._PA_137_[PER]___
AACGCTCCGGGGAATTCCCGGGCTACAG
3._PA_137_[PER]___
AACGCTCCGGGGAATTCCCGGGCTACAG
4._PA_137_[PER]___
AACGCTCCGG__AATTCCCGGGCTACAG
5._PA_137_[PER]___
______CCGGGG__TTCCCGGGCTACAG
6._PA_137_[PER]___
______CC__GG______CGGGCTACAG
7._PA_137_[PER]___
________GGGGAA__CCCG____AC__
8._PA_137_[PER]___
AACGCTCCGGGGAACTCCCGGGCTACAG
9._PA_137_[PER]___
AACGCTCCGGGGAACTCCCGGGCTACAG
10._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
11._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
12._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
13._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
14._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
15._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
16._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
17._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
18._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
19._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
20._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
21._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
22._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
23._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
24._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
25._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
26._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
27._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
28._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
29._PA_137_[PER]___
AACGCTCCGGGGAGTTCCCGGGCTACAG
30._PA_137_[PER]___
________GGGGAA__CCCG____AA__
31._PA_137_[PER]___
AACGCTCC__GTAATT__CGGGCTACAG
32._PA_137_[PER]___
______CCCC______CCCG________
33._PA_137_[PER]___
AACGAGGGCCCC__AACCCGCC__AC__
34._PA_137_[PER]___
AACGAGGGCCCC__AACCCGCC__AC__
35._PA_137_[PER]___
AACGAGGGCCCC__AACCCGCC__AC__
 29 30 31 32 33 34 35 36 37 38     
_Input profile
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
1._PA_137_[PER]___
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
2._PA_137_[PER]___
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
3._PA_137_[PER]___
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
4._PA_137_[PER]___
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
5._PA_137_[PER]___
__AACCAGACCTGTAC____X_XX_XX_XX_X
6._PA_137_[PER]___
__AA__AGAC__GTAC____X_XX_XX_XX_X
7._PA_137_[PER]___
______AG______AC____X_XX_XX_XX_X
8._PA_137_[PER]___
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
9._PA_137_[PER]___
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
10._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
11._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
12._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
13._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
14._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
15._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
16._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
17._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
18._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
19._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
20._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
21._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
22._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
23._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
24._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
25._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
26._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
27._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
28._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
29._PA_137_[PER]___
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
30._PA_137_[PER]___
______AG______AC____X_XX_XX_XX_X
31._PA_137_[PER]___
GGAA__AGACCTGTACATGGX_XX_XX_XX_X
32._PA_137_[PER]___
__AA__AGACCT__AC____X_XX_XX_XX_X
33._PA_137_[PER]___
GGAAGGAGACAGACACATGGX_XX_XX_XX_X
34._PA_137_[PER]___
GGAAGGAGACAGACACATGGX_XX_XX_XX_X
35._PA_137_[PER]___
GGAAGGAGACAGACACATGGX_XX_XX_XX_X

Input profile: PA_137_[PER]

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

1._PA_137_[PER] RUQ_1081

identical
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

3._PA_137_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

5._PA_137_[PER] RUQ_1081

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_137_[PER] RUQ_36

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._PA_137_[PER] RUQ_1081

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

8._PA_137_[PER] RUQ_36

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_1081

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

21._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

24._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

25._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_36

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

31._PA_137_[PER] RUQ_36

94.1 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

83.3 %
12 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

50 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

50 %
34 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25