SNP Profiles of ICS 8   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCTTAACCTTTTTTAAAAGGCT
1._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
2._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
3._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
4._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
5._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
6._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
7._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
8._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
9._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
10._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
11._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
12._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
13._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
14._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
15._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
16._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAAGGCT
17._ICS_8___
AAAACCGGAAAAGGAA____AAAAGGAG
18._ICS_8___
AGAACCGGAAACAGAC____AAAGAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
1._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
2._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
3._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
4._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
5._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
6._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
7._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
8._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
9._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
10._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
11._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
12._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
13._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTCCAA
14._ICS_8___
AAGGTT__GGGGGGTTCCCCTTTTCCAA
15._ICS_8___
AAGGTT__GGGGGGTTCCCCTTTTCCAA
16._ICS_8___
AAGGTTCCGGGGGGTTCCCCTTTTACAA
17._ICS_8___
AAGGAAGGCCCC__AACCCCAA__CC__
18._ICS_8___
AAGGAAGGCGCC__AAACCGAA__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
1._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
2._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
3._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
4._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
5._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
6._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
7._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
8._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
9._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
10._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
11._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
12._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
13._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
14._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
15._ICS_8___
GGAACCAGCCACCTGTACTTGGX_XX_XX_X
16._ICS_8___
AGAACCAG__ACCTGTACTTGGX_XX_XX_X
17._ICS_8___
GGAAGGAGGGACAGACACTTGGX_XX_XX_X
18._ICS_8___
GGAAGGAAGGAAAGACCCATGGX_XX_XX_X

Input profile: ICS_8

 
Mars Center for Cocoa Science, Brazil
Location: 8165 1 > FP
 Dapeng Zhang, 2016

1._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 3 > FP
 Dapeng Zhang, 2016

9._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 6
 Dapeng Zhang, 2016

10._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 7
 Dapeng Zhang, 2016

11._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 8
 Dapeng Zhang, 2016

12._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 9
 Dapeng Zhang, 2016

13._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 2 > FP
 Dapeng Zhang, 2016

14._ICS_8 GC-08-054-1-65

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

15._ICS_8

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 10
 Dapeng Zhang, 2016

16._ICS_8

97.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block5
 Dapeng Zhang, 2016

17._ICS_8 GC-05-53-2-4

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: GC05, Block: 2, Rep: 4, Tree: 1
Notes: MCCS_Selection_parents
 Mars, 2018

18._ICS_8 GC-05-53-2-4

38.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: GC05, Block: 2, Rep: 4, Tree: 4
Notes: MCCS_Selection_parents
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25