SNP Profiles of ICS 8   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCTTAACCTTTTTTAAAACTGG
1._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
2._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
3._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
4._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
5._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
6._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
7._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
8._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
9._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
10._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
11._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
12._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
13._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAA__GG
14._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
15._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAA__GG
16._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
17._ICS_8___
AAAACCGGAAAAGGAA____AAAAAGGG
18._ICS_8___
AGAACCGGAAACAGAC____AAAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
1._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
2._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
3._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
4._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
5._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
6._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
7._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
8._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
9._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
10._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
11._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
12._ICS_8___
CTAAGGTT__GGGGGGTTCCCCTTTTCC
13._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
14._ICS_8___
CTAAGGTT__GGGGGGTTCCCCTTTTCC
15._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
16._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTAC
17._ICS_8___
AGAAGGAAGGCCCC__AACCCCAA__CC
18._ICS_8___
AAAAGGAAGGCGCC__AAACCGAA__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCCACCTGTACTTGGX_XX_X
1._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
2._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
3._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
4._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
5._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
6._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
7._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
8._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
9._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
10._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
11._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
12._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
13._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
14._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
15._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
16._ICS_8___
AAAGAACCAG__ACCTGTACTTGGX_XX_X
17._ICS_8___
__GGAAGGAGGGACAGACACTTGGX_XX_X
18._ICS_8___
__GGAAGGAAGGAAAGACCCATGGX_XX_X

Input profile: ICS_8

 
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Mars Center for Cocoa Science, Brazil
Location: 8165 8
 Dapeng Zhang, 2016

1._ICS_8 GC-08-054-1-65

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._ICS_8 GC-08-054-1-65

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._ICS_8 GC-08-054-1-65

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._ICS_8 GC-08-054-1-65

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._ICS_8 GC-08-054-1-65

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._ICS_8 GC-08-054-1-65

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8165 3 > FP
 Dapeng Zhang, 2016

8._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8165 6
 Dapeng Zhang, 2016

9._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8165 7
 Dapeng Zhang, 2016

10._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8165 9
 Dapeng Zhang, 2016

11._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8165 2 > FP
 Dapeng Zhang, 2016

12._ICS_8 GC-08-054-1-65

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._ICS_8 GC-08-054-1-65

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._ICS_8

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8165 10
 Dapeng Zhang, 2016

15._ICS_8

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8165 1 > FP
 Dapeng Zhang, 2016

16._ICS_8

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block5
 Dapeng Zhang, 2016

17._ICS_8 GC-05-53-2-4

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: GC05, Block: 2, Rep: 4, Tree: 1
Notes: MCCS_Selection_parents
 Mars, 2018

18._ICS_8 GC-05-53-2-4

37.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: GC05, Block: 2, Rep: 4, Tree: 4
Notes: MCCS_Selection_parents
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25