SNP Profiles of PA 137 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTACAGCCAAGGAGACCTGG
1._PA_137_[PER]___
GGATACGTCTACAGCCAAGGAGACCTGG
2._PA_137_[PER]___
GGATACGTCTACAGCCAAGGAGACCTGG
3._PA_137_[PER]___
GGATACGTCTACAGCCAAGGAGACCTGG
4._PA_137_[PER]___
GGATACGTCTACAGCCAAGGAGACCTGG
5._PA_137_[PER]___
____ACGTCTACAGCCAA__AGACCTGG
6._PA_137_[PER]___
____AC______AG________AC____
7._PA_137_[PER]___
____ACGT__ACAG__AA__AGACCTGG
8._PA_137_[PER]___
GGATACGTCTACAGCCAAGGAGACCTGG
9._PA_137_[PER]___
GGATACGTCTACAGCCAAGGAGACCTGG
10._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
11._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
12._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
13._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
14._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
15._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
16._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
17._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
18._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
19._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
20._PA_137_[PER]___
____AC______AG________AA____
21._PA_137_[PER]___
GGATACGTCTACAG__AAGGAGACCTGG
22._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
23._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
24._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
25._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
26._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
27._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
28._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
29._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
30._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
31._PA_137_[PER]___
GGATACGTCTAAAGCCAAGGAGACCTGG
32._PA_137_[PER]___
____AC__CTACAG__AA__________
33._PA_137_[PER]___
GGATACACAGACAGGGAAGG__AC__CC
34._PA_137_[PER]___
GGATACACAGACAGGGAAGG__AC__CC
35._PA_137_[PER]___
GGATACACAGACAGGGAAGG__AC__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGCCTTAATTGGCCCCCTCGAACTAGCC
1._PA_137_[PER]___
CGCCTTAA__GG__CCCTCGAACTAGCC
2._PA_137_[PER]___
CGCCTTAA__GG__CCCTCGAACTAGCC
3._PA_137_[PER]___
CGCCTTAA__GG__CCCTCGAACTAGCC
4._PA_137_[PER]___
CGCCTTAA__GG__CCCTCGAACTAGCC
5._PA_137_[PER]___
CGCCTT____GGCCCC________AGCC
6._PA_137_[PER]___
CGCC__AATTGG____________AG__
7._PA_137_[PER]___
CG____________CC________AG__
8._PA_137_[PER]___
CGCCCTAA__GG__CCCTCGAACTAGCC
9._PA_137_[PER]___
CGCCCTAA__GG__CCCTCGAACTAGCC
10._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
11._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
12._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
13._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
14._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
15._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
16._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
17._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
18._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
19._PA_137_[PER]___
CGCCTTAG__GG__CCCTCGAACTAGCC
20._PA_137_[PER]___
CGCC__AATTGG____________AG__
21._PA_137_[PER]___
CG__TTAA______CCCTCGAACTAG__
22._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
23._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
24._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
25._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
26._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
27._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
28._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
29._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
30._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
31._PA_137_[PER]___
CGCCTTAGCGGGCCCCCTCGAACTAGCC
32._PA_137_[PER]___
CGCC______CCGGCC______CT__CC
33._PA_137_[PER]___
CGCCAA__CGCC__GGAGCGAAAGAGGG
34._PA_137_[PER]___
CGCCAA__CGCC__GGAGCGAAAGAGGG
35._PA_137_[PER]___
CGCCAA__CGCC__GGAGCGAAAGAGGG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
1._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
2._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
3._PA_137_[PER]___
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
4._PA_137_[PER]___
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
5._PA_137_[PER]___
________TT______CTCCGG__X_XX_X
6._PA_137_[PER]___
GG__CC__TT________CC____X_XX_X
7._PA_137_[PER]___
________________CT______X_XX_X
8._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
9._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
10._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
11._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
12._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
13._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
14._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
15._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
16._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
17._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
18._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
19._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
20._PA_137_[PER]___
GG__CC__TT________CC____X_XX_X
21._PA_137_[PER]___
GGAA__CCGTCTACTTCTCGAGCCX_XX_X
22._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
23._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
24._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
25._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
26._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
27._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
28._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
29._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
30._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
31._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
32._PA_137_[PER]___
__________________GG____X_XX_X
33._PA_137_[PER]___
GGAA____AAAGACAAAGGGGGGGX_XX_X
34._PA_137_[PER]___
GGAA____AAAGACAAAGGGGGGGX_XX_X
35._PA_137_[PER]___
GGAA____AAAGACAAAGGGGGGGX_XX_X

Input profile: PA_137_[PER]

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

1._PA_137_[PER] RUQ_1081

identical
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

3._PA_137_[PER]

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] RUQ_1081

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_137_[PER] RUQ_1081

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

7._PA_137_[PER] RUQ_36

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._PA_137_[PER] RUQ_36

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_1081

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

12._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

14._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

16._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER] RUQ_36

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

21._PA_137_[PER] RUQ_36

95.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

25._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._PA_137_[PER] GC-05-009-1-09

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._PA_137_[PER] GC-05-117-3-19

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._PA_137_[PER] PA137[PER]

76.9 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

50 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

50 %
34 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP836 20TcSNP872
21TcSNP878 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520