SNP Profiles of PA 137 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGTCTGGACCCAGCCGGGGAACC
1._PA_137_[PER]___
____ACGTCT__ACCCAGCC____AA__
2._PA_137_[PER]___
____ACGTCT__ACCCAGCC____AA__
3._PA_137_[PER]___
____ACGTCT__AC__AGCC____AA__
4._PA_137_[PER]___
____ACGTCT__AC__AGCC____AA__
5._PA_137_[PER]___
____ACGTCT__AC__AGCC____AA__
6._PA_137_[PER]___
____AC__________AG__GG______
7._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
8._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
9._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
10._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
11._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
12._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
13._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
14._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
15._PA_137_[PER]___
TTCCACGTCTGGAACCAGCCGGGGAACC
16._PA_137_[PER]___
__CCACGTCTGGAACCAGCCGGGGAACC
17._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
18._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
19._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
20._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
21._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
22._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
23._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
24._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
25._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
26._PA_137_[PER]___
____ACGTCT__AACCAGCC____AA__
27._PA_137_[PER]___
____ACGTCT__ACCCAGCC____AA__
28._PA_137_[PER]___
____ACGTCT__ACCCAGCC____AA__
29._PA_137_[PER]___
__CCACGT____AC__AG______AACC
30._PA_137_[PER]___
____AC__________AG__GG______
31._PA_137_[PER]___
____ACGTCT__ACCGAG______AA__
32._PA_137_[PER]___
____AC__CTGGACGGAG____GGAACC
33._PA_137_[PER]___
AACCACACAGGGACGGAGGGGGGGAAGG
34._PA_137_[PER]___
AACCACACAGGGACGGAGGGGGGGAAGG
35._PA_137_[PER]___
AACCACACAGGGACGGAGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGACCTGGCGCCTTTTCCGGGGTTAAGG
1._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
2._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
3._PA_137_[PER]___
AGACCTGGCGCC__TT__________GG
4._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
5._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
6._PA_137_[PER]___
__AC____CGCCTT__CCGGGG__AAGG
7._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
8._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
9._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
10._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
11._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
12._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
13._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
14._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
15._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
16._PA_137_[PER]___
AGACCTGGCGCCTTTTCCGGGGTTAAGG
17._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
18._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
19._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
20._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
21._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
22._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
23._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
24._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
25._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
26._PA_137_[PER]___
AGACCTGGCGCC__TT__GG______GG
27._PA_137_[PER]___
AGACCTGGCGCC__CT__GG______GG
28._PA_137_[PER]___
AGACCTGGCGCC__CT__GG______GG
29._PA_137_[PER]___
AGACCTGGCG________GG________
30._PA_137_[PER]___
__AA____CGCCTT__CCGGGG__AAGG
31._PA_137_[PER]___
AGACCTGGCG____TT__GT________
32._PA_137_[PER]___
________CGCCTT____________CC
33._PA_137_[PER]___
__AC__CCCGCCAAAA__CCGGAAAACC
34._PA_137_[PER]___
__AC__CCCGCCAAAA__CCGGAAAACC
35._PA_137_[PER]___
__AC__CCCGCCAAAA__CCGGAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGTTCCGGGGTTTTCCCCCTCCGG
1._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
2._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
3._PA_137_[PER]___
CCCCAG__CC______TT____CTCCGG
4._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
5._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
6._PA_137_[PER]___
____AGTT________TT______CC__
7._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
8._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
9._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
10._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
11._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
12._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
13._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
14._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
15._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
16._PA_137_[PER]___
CCCCAGTTCCGGGGTTTT__CCCTCCGG
17._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
18._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
19._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
20._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
21._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
22._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
23._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
24._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
25._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
26._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
27._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
28._PA_137_[PER]___
__CCAG__CC______TT____CTCCGG
29._PA_137_[PER]___
__CCAGCT__GGGGTT______CT____
30._PA_137_[PER]___
____AGTT________TT______CC__
31._PA_137_[PER]___
__CCAG__________GT____CTCGAG
32._PA_137_[PER]___
GGCC____CC__GGTT____CC__GG__
33._PA_137_[PER]___
__GGAG__GGCCGG__AAGGGGAGGGGG
34._PA_137_[PER]___
__GGAG__GGCCGG__AAGGGGAGGGGG
35._PA_137_[PER]___
__GGAG__GGCCGG__AAGGGGAGGGGG

Input profile: PA_137_[PER] RUQ_1081

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_137_[PER] RUQ_1081

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

3._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

4._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

6._PA_137_[PER] RUQ_1081

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

7._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

12._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER] GC-05-009-1-09

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

20._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

21._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

24._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

25._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

26._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

27._PA_137_[PER] RUQ_36

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._PA_137_[PER] RUQ_1081

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._PA_137_[PER] RUQ_36

97.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_137_[PER] RUQ_36

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

31._PA_137_[PER] RUQ_36

87.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

80 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

44.4 %
36 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

44.4 %
36 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484