SNP Profiles of GU%20168%20/H View Data

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_Input profile	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
1._RUQ_223	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
2._RUQ_223	_	_	AA	_	_	_	_	_	GG	_	GG	_	_	_
3._GC-03-023-2-12	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
4._GC-03-023-2-12	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
5._GC-03-023-2-12	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
6._GC-03-023-2-12	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
7._GC-03-023-2-12	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
8._GC-03-023-2-12	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
9._GC-03-023-2-12	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
10._GC-03-023-2-12	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
11._GC-03-023-2-12	TT	CC	AA	TT	_	GG	AA	CC	GG	CC	GG	GG	AA	CC
12._GC-03-023-2-12	TT	CC	_	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
13._GU_168_/H	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
14._GU_168_/H	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
15._GU_168_/H	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
16._GU_168_/H	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
17._GU_168_/H	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
18._GU_168_/H	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
19._GU_168_/H	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
20._GU_168_/H	_	_	_	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
21._GU_168_/H	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
22._GU_168_/H	_	_	AA	TT	_	_	AA	CC	GG	CC	_	_	AA	_
23._GC-03-023-2-12	TT	CC	AC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
24._GU_168_/H	_	_	AC	TT	CC	_	AA	CC	AA	CC	_	_	AA	_
25._GC-03-23-2-12	AA	CC	AA	AA	AA	GG	AA	GG	GG	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
1._RUQ_223	AG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
2._RUQ_223	_	AA	_	_	CC	CC	CC	_	CC	GG	AA	_	AA	GG
3._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
4._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
5._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
6._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
7._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
8._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
9._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
10._GC-03-023-2-12	GG	AA	CC	GG	_	CC	CC	CC	CC	GG	AA	TT	AA	GG
11._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
12._GC-03-023-2-12	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
13._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
14._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
15._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
16._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
17._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
18._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
19._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
20._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
21._GU_168_/H	GG	AA	CC	GG	_	CC	_	CC	_	GG	_	_	_	GG
22._GU_168_/H	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
23._GC-03-023-2-12	AA	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	TT	AA	GG
24._GU_168_/H	AA	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG
25._GC-03-23-2-12	_	AA	_	CC	CC	CC	GG	GG	_	CC	AA	AA	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	CC	GG	AG
1._RUQ_223	_	CC	AG	_	CC	_	_	_	TT	_	_	CC	GG	AG
2._RUQ_223	_	_	AG	CC	_	_	_	_	TT	_	_	_	GG	_
3._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
4._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
5._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
6._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
7._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
8._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
9._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
10._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
11._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
12._GC-03-023-2-12	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
13._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
14._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
15._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
16._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
17._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
18._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
19._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
20._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
21._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
22._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
23._GC-03-023-2-12	CC	CC	GG	TT	CC	GG	AA	TT	TT	TT	TT	CT	GG	AA
24._GU_168_/H	_	CC	GG	_	CC	_	_	_	TT	_	_	CT	GG	AA
25._GC-03-23-2-12	_	GG	GG	_	GG	CC	GG	_	AA	AA	GG	GG	GG	GG

Input profile: GU_168_/H RUQ_223

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._GU_168_/H RUQ_223

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._GU_168_/H RUQ_223

identical
16 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

3._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

4._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

5._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP1

6._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

10._GU_168_/H GC-03-023-2-12

93.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP3

11._GU_168_/H GC-03-023-2-12

93.9 %
41 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

12._GU_168_/H GC-03-023-2-12

93.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

13._GU_168_/H

89.6 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._GU_168_/H

89.6 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 4

Dapeng Zhang, 2016

15._GU_168_/H

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 6

Dapeng Zhang, 2016

16._GU_168_/H

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 13

Dapeng Zhang, 2016

17._GU_168_/H

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 15

Dapeng Zhang, 2016

18._GU_168_/H

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 1 > FP

Dapeng Zhang, 2016

19._GU_168_/H

89.6 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 10 > F

Dapeng Zhang, 2016

20._GU_168_/H

89.1 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 3

Dapeng Zhang, 2016

21._GU_168_/H

89.1 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 12 > F

Dapeng Zhang, 2016

22._GU_168_/H

89.1 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 7 > FP

Dapeng Zhang, 2016

23._GU_168_/H GC-03-023-2-12

67.9 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

24._GU_168_/H

64.6 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 16

Dapeng Zhang, 2016

25._GU_168_/H GC-03-23-2-12

44.4 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 3, Block: 2, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484