SNP Profiles of PA 175 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACCCAGACAAGGAGCCAAGGGGAAAAAC
1._PA_175_[PER]___
ACCCAGACAAGGAGCCAAGGGGAAAAAC
2._PA_175_[PER]___
ACCCAGACAAGGAGCCAAGGGGAAAAAC
3._PA_175_[PER]___
____________AG______________
4._PA_175_[PER]___
__________CCAG__AA__________
5._PA_175_[PER]___
__________CCAG__AA__________
6._PA_175_[PER]___
__________CCAG__AA__________
7._PA_175_[PER]___
__________CCAG__AA__________
8._PA_175_[PER]___
__________CCAG__AA__________
9._PA_175_[PER]___
__________CCAG__AA__________
10._PA_175_[PER]___
__________CCAG__AA__________
11._PA_175_[PER]___
ACCCAGACTTCCAGGGAACCGGTTTTGT
12._PA_175_[PER]___
ACCCAGACTTCCAGGGAACCGGTTTTGT
13._PA_175_[PER]___
ACCCAGACTTCCAGGGAACCGGTTTTGT
14._PA_175_[PER]___
ACCCAGACTTCCAGGGAACCGGTTTTGT
15._PA_175_[PER]___
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGAGACGGAAAGCCAGCGGGCCGG
1._PA_175_[PER]___
AAAAGGAGACGGAAAGCCAGCGGGCCGG
2._PA_175_[PER]___
AAAAGGAGACGGAAAGCCAGCGGGCCGG
3._PA_175_[PER]___
__TT____________CC__CG______
4._PA_175_[PER]___
__TTCC__AC__TT__CCCTCGGGGGCC
5._PA_175_[PER]___
__TTCC__AC__TT__CCCTCGGGGGCC
6._PA_175_[PER]___
__TTCC__AC__TT__CCCTCGGGGGCC
7._PA_175_[PER]___
__TTCC__AC__TT__CCCTCGGGGGCC
8._PA_175_[PER]___
__TTCC__AC__TT__CCCTCGGGGGCC
9._PA_175_[PER]___
__TTCC__AC__TT__CCCTCGGGGGCC
10._PA_175_[PER]___
__TTCC__AC__TT__CCCTCGGGGGCC
11._PA_175_[PER]___
TTTTCCTTACGGTTCTCCCTCGGGGGCC
12._PA_175_[PER]___
TTTTCCTTACGGTTCTCCCTCGGGGGCC
13._PA_175_[PER]___
TTTTCCTTACGGTTCTCCCTCGGGGGCC
14._PA_175_[PER]___
TTTTCCTTACGGTTCTCCCTCGGGGGCC
15._PA_175_[PER]___
__TT__CT______CTCCCTCGGGGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._PA_175_[PER]___
GGTTGGAAGGGGGGGGGGCCTTATGGGG
2._PA_175_[PER]___
GGTTGGAAGGGGGGGGGGCCTTATGGGG
3._PA_175_[PER]___
__________GG____________GG__
4._PA_175_[PER]___
CC____AACCGG__CCGG____AT____
5._PA_175_[PER]___
CC____AACCGG__CCGG____AT____
6._PA_175_[PER]___
CC____AACCGG__CCGG____AT____
7._PA_175_[PER]___
CC____AACCGG__CCGG____AT____
8._PA_175_[PER]___
CC____AACCGG__CCGG____AT____
9._PA_175_[PER]___
CC____AACCGG__CCGG____AT____
10._PA_175_[PER]___
CC____AACCGG__CCGG____AT____
11._PA_175_[PER]___
CCAAGGAACCGGGGCCGG__AAATGGGG
12._PA_175_[PER]___
CCAAGGAACCGGGGCCGGGGAAATGGGG
13._PA_175_[PER]___
CCAAGGAACCGGGGCCGGGGAAATGGGG
14._PA_175_[PER]___
CCAAGGAACCGGGGCCGGGGAAATGGGG
15._PA_175_[PER]___
____GGAACCGG__CC________GGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGGGGGGGATGGGGCCACAGACGGCG
1._PA_175_[PER]___
AAAGGGGGGGATGGGGCCACAGACGGCG
2._PA_175_[PER]___
AAAGGGGGGGATGGGGCCACAGACGGCG
3._PA_175_[PER]___
__________________AA______CG
4._PA_175_[PER]___
AA______GG________AC__GT__CG
5._PA_175_[PER]___
AA______GG________AC__GT__CG
6._PA_175_[PER]___
AA______GG________AC__GT__CG
7._PA_175_[PER]___
AA______GG________AC__GT__CG
8._PA_175_[PER]___
AA______GG________AC__GT__CG
9._PA_175_[PER]___
AA______GG________AC__GT__CG
10._PA_175_[PER]___
AA______GG________AC__GT__CG
11._PA_175_[PER]___
AACTGGGGGGATCC__CCACAGGTGGCG
12._PA_175_[PER]___
AACTGGGGGGATCC__CCACAGGTGGCG
13._PA_175_[PER]___
AACTGGGGGGATCC__CCACAGGTGGCG
14._PA_175_[PER]___
AACTGGGGGGATCC__CCACAGGTGGCG
15._PA_175_[PER]___
AA__________CC____AC__GT__CG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGAAAAGGAACCAGAAAACCAAAACG
1._PA_175_[PER]___
ACGGAAAAGGAACCAGAAAACCAAAACG
2._PA_175_[PER]___
ACGGAAAAGGAACCAGAAAACCAAAACG
3._PA_175_[PER]___
AC__TT______GGAG________AATT
4._PA_175_[PER]___
AC____TT____GG______________
5._PA_175_[PER]___
AC____TT____GG______________
6._PA_175_[PER]___
AC____TT____GG______________
7._PA_175_[PER]___
AC____TT____GG______________
8._PA_175_[PER]___
AC____TT____GG______________
9._PA_175_[PER]___
AC____TT____GG______________
10._PA_175_[PER]___
AC____TT__________________TT
11._PA_175_[PER]___
ACCCTTTTAAAAGGAGTTTTGGTTAACG
12._PA_175_[PER]___
ACCCTTTTAAAAGGAGTTTTGGTTAACG
13._PA_175_[PER]___
ACCCTTTTAAAAGGAGTTTTGGTTAACG
14._PA_175_[PER]___
ACCCTTTTAAAAGGAGTTTTGGTTAACG
15._PA_175_[PER]___
AC__TTTT____GGAGTT____TTAA__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGAGCCAGCGGGAAAAAAX_XX_X
1._PA_175_[PER]___
GGCCGGGGAGCCAGCGGGAAAAAAX_XX_X
2._PA_175_[PER]___
GGCCGGGGAGCCAGCGGGAAAAAAX_XX_X
3._PA_175_[PER]___
__GG____AG____________AAX_XX_X
4._PA_175_[PER]___
__GGCC______CTCG__AATTAAX_XX_X
5._PA_175_[PER]___
__GGCC______CTCG__AATTAAX_XX_X
6._PA_175_[PER]___
__GGCC______CTCG__AATTAAX_XX_X
7._PA_175_[PER]___
__GGCC______CTCG__AATTAAX_XX_X
8._PA_175_[PER]___
__GGCC______CTCG__AATTAAX_XX_X
9._PA_175_[PER]___
__GGCC______CTCG__AATTAAX_XX_X
10._PA_175_[PER]___
__GGCC______CTCG__AATTAAX_XX_X
11._PA_175_[PER]___
__GGCCCCAGCCCTCGCCAATTAAX_XX_X
12._PA_175_[PER]___
__GGCCCCAGCCCTCGCCAATTAAX_XX_X
13._PA_175_[PER]___
__GGCCCCAGCCCTCGCCAATTAAX_XX_X
14._PA_175_[PER]___
__GGCCCCAGCCCTCGCCAATTAAX_XX_X
15._PA_175_[PER]___
__GGCC____CC__________AAX_XX_X

Input profile: PA_175_[PER] RUQ_37

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._PA_175_[PER] -

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 27, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._PA_175_[PER] MITC-000016

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

3._PA_175_[PER] RUQ_37

67.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._PA_175_[PER]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016

5._PA_175_[PER]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

6._PA_175_[PER]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

7._PA_175_[PER]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

8._PA_175_[PER] RUQ_37

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_175_[PER]

51.4 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

10._PA_175_[PER]

51.4 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

11._PA_175_[PER] NA

50.6 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._PA_175_[PER] NA

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

13._PA_175_[PER] NA

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._PA_175_[PER] NA

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

15._PA_175_[PER] RUQ_37

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998