SNP Profiles of IMC_47   View Data

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 Key

 1234567891011121314
_Input profile
ACACAGACAAGGGGCCATAGGGAAAGAC
1._RUQ_849B
______GG_______
2._GC-08-103-3-2
CCACGGACAAAGAGCCAAAGAGAAAGAC
3._RUQ_849
_____CCGG_AT_____
4._IMC_47
_____CCGG_AT_____
5._RUQ_849
_____CC_GG__GG___
6._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
7._IMC_47
_____CTAG_AA_____
8._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
9._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
10._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
11._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
12._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
13._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
14._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
15._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
16._IMC_47
_____CTAG_AA_____
17._IMC_47
_____CTAG_AA_____
18._IMC_47
_____CTAG_AA_____
19._IMC_47
_____CTAG_AA_____
20._IMC_47
_____CTAG_AA_____
21._IMC_47
_____CTAG_AA_____
22._IMC_47
_____CTAG_AA_____
23._IMC_47
_____CTAG_AA_____
24._IMC_47
_____CCAG_AA_____
25._IMC_47
_____CTGG_AA_____
 1516171819202122232425262728
_Input profile
AAAAAAAGCCGGAGGGCCAACGAGAAAG
1._RUQ_849B
_GT______CC_CG___
2._GC-08-103-3-2
AGACGGGGACAGAGAGAAAACGAACCAG
3._RUQ_849
_GTTT_CC_CT_CCTTCGAGGTCT
4._IMC_47
_GTTT_CC_CT_CCTTCGAGTTCT
5._RUQ_849
_GT_CT___CCCCTTCGAGTTCT
6._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
7._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
8._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
9._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
10._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
11._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
12._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
13._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
14._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
15._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
16._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
17._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
18._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
19._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
20._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
21._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
22._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
23._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
24._IMC_47
_GTCT_AC_TT_CCTTCGAAGTCT
25._IMC_47
_GTTT_CC_CT_CCTTGGAGGTCT
 2930313233343536373839404142
_Input profile
GGATGGACCGAGGGAGCGCCATATGGGG
1._RUQ_849B
_____AG______GG_
2._GC-08-103-3-2
AGATGGACCGAGGGAGCGACATATAAAG
3._RUQ_849
CC__ACCGAG_CTCG__AT__
4._IMC_47
CC__ACCCAG_CTCG__AT__
5._RUQ_849
__GGACCGAG_CT____GGGG
6._GC-08-103-3-02
_ATGGACCGAGGGCTCGGTATATAAAG
7._IMC_47
___ACCGAG_CTCG__AT__
8._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
9._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
10._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
11._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
12._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
13._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
14._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
15._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
16._IMC_47
CT__ACCGAG_CTCG__AT__
17._IMC_47
CT__ACCGAG_CTCG__AT__
18._IMC_47
CT__ACCGAG_CTCG__AT__
19._IMC_47
CT__ACCGAG_CTCG__AT__
20._IMC_47
CT__ACCGAG_CTCG__AT__
21._IMC_47
CT__ACCGAG_CTCG__AT__
22._IMC_47
CT__ACCGAG_CTCG__AT__
23._IMC_47
CT__ACCGAG_CTCG__AT__
24._IMC_47
CT__AC_AG_CTGG__AA__
25._IMC_47
CC__AC_AG_TTGG__TT__
 4344454647484950515253545556
_Input profile
ATAGAGAGAGATGGGGAAACAGCCGGCG
1._RUQ_849B
_________AC___GG
2._GC-08-103-3-2
ATAGAGGGAGAACCAGACACAGACAGCG
3._RUQ_849
AT___AG____AC_GG_GG
4._IMC_47
AT___AG____AC_GG_GG
5._RUQ_849
AT_____CC__AC_GG_CG
6._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
7._IMC_47
AT___AG____AC_GT_CG
8._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
9._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
10._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
11._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
12._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
13._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
14._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
15._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
16._IMC_47
AT___AG____AC_GT_CG
17._IMC_47
AT___AG____AC_GT_CG
18._IMC_47
AT___AG____AC_GT_CG
19._IMC_47
AT___AG____AC_GT_CG
20._IMC_47
AT___AG____AC_GT_CG
21._IMC_47
AT___AG____AC_GT_CG
22._IMC_47
AT___AG____AC_GT_CG
23._IMC_47
AT___AG____AC_GT_CG
24._IMC_47
AT___AG____AC_GT_CC
25._IMC_47
AA___GG____CC_GT_GG
 5758596061626364656667686970
_Input profile
ACGGGGGGAAAACCAGAAAAACAAACCC
1._RUQ_849B
AC_CC___GGAG____ACCT
2._GC-08-103-3-2
ACAGGGAAAAAAACAGAGACCCAAACCG
3._RUQ_849
AC__CC__GG_______
4._IMC_47
AC__CC__GG_______
5._RUQ_849
AC_CCCC__GGAGTT__TTAC_
6._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
7._IMC_47
AC__TT__GT_______
8._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
9._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
10._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
11._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
12._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
13._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
14._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
15._GC-08-103-3-02
ACCTCCTTAA_GTAGCTGTGGTTACCG
16._IMC_47
AC__TT__GT_______
17._IMC_47
AC__TT__GT_______
18._IMC_47
AC__TT__GT_______
19._IMC_47
AC__TT__GT_______
20._IMC_47
AC__TT__GT_______
21._IMC_47
AC__TT__GT_______
22._IMC_47
AC__TT__GT_______
23._IMC_47
AC__TT__GT_______
24._IMC_47
AC__TT__GG_______
25._IMC_47
AA__CC__GG_______
 717273747576777879808182  
_Input profile
AGGGAAGGGGCCGGGGGGAAAAAAX_XX_X
1._RUQ_849B
_CC__GG______AAX_XX_X
2._GC-08-103-3-2
AAGGAGGGAGACAGCGAGATAGAGX_XX_X
3._RUQ_849
_CCCT___CCGG_AATTAGX_XX_X
4._IMC_47
_CCTT___CCGG_AATTAAX_XX_X
5._RUQ_849
_CCTT_-CC_____AAX_XX_X
6._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
7._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
8._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
9._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
10._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
11._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
12._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
13._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
14._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
15._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
16._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
17._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
18._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
19._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
20._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
21._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
22._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
23._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
24._IMC_47
_CCCT___CTCG_ATCTAAX_XX_X
25._IMC_47
_CCCT___CCGG_ATTTAAX_XX_X

Input profile: IMC_47 MITC-000413

 
USDA-SHRS, United States of America
 Mars, 2018

1._IMC_47 RUQ_849B

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._IMC_47 GC-08-103-3-2

69.5 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

3._IMC_47 RUQ_849

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._IMC_47

51.4 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

5._IMC_47 RUQ_849

50 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._IMC_47 GC-08-103-3-02

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._IMC_47

42.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

8._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

12._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

13._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._IMC_47 GC-08-103-3-02

41.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._IMC_47

41.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

17._IMC_47

41.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._IMC_47

41.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

19._IMC_47

41.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

20._IMC_47

41.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

21._IMC_47

41.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

22._IMC_47

41.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

23._IMC_47

41.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

24._IMC_47

39.7 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

25._IMC_47

38.2 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998