SNP Profiles of MO_20   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCACGGACAAAGAGACAAAGAGAGAGAC
1._RUQ_1566
CCACGGACAAAGAGACAAAGAGAGAGAC
2._MO_20_Fld#_171_Plt#_1
CCACGGACAAAGAGACAAAGAGAGAGAC
3._RUQ_1566
______AG_______
4._MO_20_Fld#_74_Plt#_1
ACACAAAAAGAGAACCAAGGAGAAAACC
5._RUQ_1566
_____CT____AG___
6._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
7._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
8._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
9._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
10._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
11._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
12._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
13._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
14._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
15._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
16._MO_20
_____CTAG_AA_____
17._MO_20
_____CTAG_AA_____
18._MO_20
_____CTAG_AA_____
19._MO_20
_____CTAG_AA_____
20._MO_20
_____CTAG_AA_____
21._MO_20
_____CTAG_AA_____
22._MO_20
_____CTAG_AA_____
23._MO_20
_____CTAG_AA_____
24._MO_20
_____CTAG_AA_____
25._MO_20
_____CTAG_AA_____
26._MO_20
_____CTAG_AA_____
27._RUQ_1566
_____-_GG__GG___
28._GC-01-121-6-18
CCAAAGCCTTCCGGGGAACCGGTTCCTT
29._MO_20
_____CCGG_AA_____
30._MO_20
_____CCGG_TT_____
 1516171819202122232425262728
_Input profile
AGACAGAGACAGAGAGAAGGAAACAGAG
1._RUQ_1566
AGACAGAGACAGAGAGAAGGAAACAGAG
2._MO_20_Fld#_171_Plt#_1
AGACAGAGACAGAGAGAAGGAAACAGAG
3._RUQ_1566
_GT_______CC____
4._MO_20_Fld#_74_Plt#_1
GGAAGGAAAAGGAAAGAGCCAAACAGAG
5._RUQ_1566
_______CT_GG__CT_
6._GC-01-121-6-18
CTGTCTTTACAGCT_TTCCAAGTCTCT
7._GC-08-167-4-10
CTGTCTTTACAGCTCTTTCCAAGTCTCT
8._GC-08-167-4-10
CTGTCTTTACAGCTCTTTCCAAGTCTCT
9._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
10._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
11._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
12._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
13._GC-01-121-6-18
CTGTCTTTACAGCTCTTTCCAAGTCTCT
14._GC-08-167-4-10
CTGTCTTTACAGCTCTTTCCAAGTCTCT
15._GC-08-167-4-10
CTGTCTTTACAGCTCTTTCCAAGTCTCT
16._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
17._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
18._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
19._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
20._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
21._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
22._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
23._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
24._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
25._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
26._MO_20
_GTCT_AC_CT_TTCCAAGTCTCT
27._RUQ_1566
_-_-___CCTT----_
28._GC-01-121-6-18
TTTTTTTT_GGTTCCCCCGGGTTTTCC
29._MO_20
_TTTT___TT_CCCGGGTTTTCC
30._MO_20
_TTTT_CC_CC_TTCCGGGGTTCC
 2930313233343536373839404142
_Input profile
ATGGACGGAGGGAGCGACTTATAGAGAA
1._RUQ_1566
ATGGACGGAGGGAGCGACTTATAGAGAA
2._MO_20_Fld#_171_Plt#_1
ATGGACGGAGGGAGCGACTTATAGAGAA
3._RUQ_1566
____AG______AG__
4._MO_20_Fld#_74_Plt#_1
ATAGAAGGAAGGAGGGCCATATGGGGAT
5._RUQ_1566
_GGACGGAG_______AGAA
6._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
7._GC-08-167-4-10
ATGGACCCAGGGCTCGGTAAATAGAGAA
8._GC-08-167-4-10
ATGGACCCAGGGCTCGGTAAATAGAGAA
9._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
10._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
11._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
12._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
13._GC-01-121-6-18
ATGGACCCAGGGCTCGGTAAATAGAGAA
14._GC-08-167-4-10
ATGGACCCAGGGCTCGGTAAATAGAGAA
15._GC-08-167-4-10
ATGGACCCAGGGCTCGGTAAATAGAGAA
16._MO_20
__ACCCAG_CTCG__AT__AA
17._MO_20
__ACCCAG_CTCG__AT__AA
18._MO_20
__ACCCAG_CTCG__AT__AA
19._MO_20
__ACCCAG_CTCG__AT__AA
20._MO_20
__ACCCAG_CTCG__AT__AA
21._MO_20
__ACCCAG_CTCG__AT__AA
22._MO_20
__ACCCAG_CTCG__AT__AA
23._MO_20
__ACCCAG_CTCG__AT__AA
24._MO_20
__ACCCAG_CTCG__AT__AA
25._MO_20
__ACCCAG_CTCG__AT__AA
26._MO_20
__ACCCAG_CTCG__AT__AA
27._RUQ_1566
_--CC-_-____---
28._GC-01-121-6-18
AAGGAACCGGGGCCGGGGAATTGGGGAA
29._MO_20
__AACCGG_CCGG__TT__AA
30._MO_20
__CCCCAA_CCCC__AA__TT
 4344454647484950515253545556
_Input profile
GGAAGGGGATCGAGACACAGACAGCGCC
1._RUQ_1566
GGAAGGGGATCGAGACACAGACAGCGCC
2._MO_20_Fld#_171_Plt#_1
GGAAGGGGATCGAGACACAGACAGCGCC
3._RUQ_1566
________AC___CGCC
4._MO_20_Fld#_74_Plt#_1
AGAGGGGGAACGAACCCCGGAAAACCCC
5._RUQ_1566
CC____CC______CGCC
6._GC-01-121-6-18
CCAAGGGGATCG_ACACAGGTAGCGCC
7._GC-08-167-4-10
CCAAGGGGATCG_ACACAGGTAGCGCC
8._GC-08-167-4-10
CCAAGGGGATCG_ACACAGGTAGCGCC
9._GC-01-121-6-18
CCAAGGGGATCG_ACACAGGTAGCGCC
10._GC-01-121-6-18
CCAAGGGGATCG_ACACAGGTAGCGCC
11._GC-01-121-6-18
CCAAGGGGATCG_ACACAGGTAGCGCC
12._GC-01-121-6-18
CCAAGGGGATCG_ACACAGGTAGCGCC
13._GC-01-121-6-18
CCAAGGGGATCG_ACACAGGTAGCGCC
14._GC-08-167-4-10
CCAAGGGGATCG_ACACAGGTAGCGCC
15._GC-08-167-4-10
CCAAGGGGATCG_ACACAGGTAGCGCC
16._MO_20
___GG____AC_GT_CGCC
17._MO_20
___GG____AC_GT_CGCC
18._MO_20
___GG____AC_GT_CGCC
19._MO_20
___GG____AC_GT_CGCC
20._MO_20
___GG____AC_GT_CGCC
21._MO_20
___GG____AC_GT_CGCC
22._MO_20
___GG____AC_GT_CGCC
23._MO_20
___GG____AC_GT_CGCC
24._MO_20
___GG____AC_GT_CGCC
25._MO_20
___GG____AC_GT_CGCC
26._MO_20
___GG____AC_GT_CGCC
27._RUQ_1566
_____-__AC_GG_-CC
28._GC-01-121-6-18
TTGGGGGGTTCC_CCAAGGGGGGCCAC
29._MO_20
___GG____AA_GG_CCAC
30._MO_20
___AG____AA_GG_GGCC
 5758596061626364656667686970
_Input profile
GGAGAAAAAGCCAGAGAACCAACCCGAA
1._RUQ_1566
GGAGAAAAAGCCAGAGAACCAACCCGAA
2._MO_20_Fld#_171_Plt#_1
GGAGAAAAAGCCAGAGAACCAACCCGAA
3._RUQ_1566
_CT___GGAG____CCCT_
4._MO_20_Fld#_74_Plt#_1
GGAGAAGGAACCGGAAACACAACCCCGG
5._RUQ_1566
_CT______TT____AA
6._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
7._GC-08-167-4-10
CCCTTTAGAGGGAG_TTGGTTCCCGAA
8._GC-08-167-4-10
CCCTTTAGAGGGAG_TTGGTTCCCGAA
9._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
10._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
11._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
12._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
13._GC-01-121-6-18
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
14._GC-08-167-4-10
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
15._GC-08-167-4-10
CCCTTTAGAGGGAGCTTTGGTTCCCGAA
16._MO_20
__TT__GG________
17._MO_20
__TT__GG________
18._MO_20
__TT__GG________
19._MO_20
__TT__GG________
20._MO_20
__TT__GG________
21._MO_20
__TT__GG________
22._MO_20
__TT__GG________
23._MO_20
__TT__GG________
24._MO_20
__TT__GG________
25._MO_20
__TT__GG________
26._MO_20
__TT__GG________
27._RUQ_1566
_--__---__-CC__
28._GC-01-121-6-18
CCCCCCAAAAGGAATTGGTTTTAAGG_
29._MO_20
__CC__GG________
30._MO_20
__CC__GT________
 7172737475767778798081   
_Input profile
CGAGGGAGCCAGCGAGATAGAAX_XX_XX_X
1._RUQ_1566
CGAGGGAGCCAGCGAGATAGAAX_XX_XX_X
2._MO_20_Fld#_171_Plt#_1
CGAGGGAGCCAGCGAGATAGAAX_XX_XX_X
3._RUQ_1566
CG__AG______AAX_XX_XX_X
4._MO_20_Fld#_74_Plt#_1
CCGGGGAGCCAAGGAGAAAAAGX_XX_XX_X
5._RUQ_1566
CGCT_______CT_X_XX_XX_X
6._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
7._GC-08-167-4-10
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
8._GC-08-167-4-10
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
9._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
10._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
11._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
12._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
13._GC-01-121-6-18
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
14._GC-08-167-4-10
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
15._GC-08-167-4-10
CGCTCCAGCCCTCGCTATCTAAX_XX_XX_X
16._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
17._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
18._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
19._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
20._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
21._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
22._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
23._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
24._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
25._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
26._MO_20
CGCT___CTCG_ATCTAAX_XX_XX_X
27._RUQ_1566
--_-CC_____-X_XX_XX_X
28._GC-01-121-6-18
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
29._MO_20
GGCC___CCGG_AACTGGX_XX_XX_X
30._MO_20
CCTT___TTGG_TTTTAAX_XX_XX_X

Input profile: MO_20 MITC-000675

 
 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

1._MO_20 RUQ_1566

identical
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._MO_20 MO_20_Fld#_171_Plt#_1

identical
81 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

3._MO_20 RUQ_1566

68.8 %
16 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._MO_20 MO_20_Fld#_74_Plt#_1

64.8 %
81 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

5._MO_20 RUQ_1566

59.5 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

6._MO_20 GC-01-121-6-18

53.8 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

7._MO_20 GC-08-167-4-10

53.8 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._MO_20 GC-08-167-4-10

53.8 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

11._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._MO_20 GC-01-121-6-18

53.1 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

14._MO_20 GC-08-167-4-10

53.1 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._MO_20 GC-08-167-4-10

53.1 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

18._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

19._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

20._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

21._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

22._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

23._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

24._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

25._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

26._MO_20

50 %
34 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

27._MO_20 RUQ_1566

45 %
10 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._MO_20 GC-01-121-6-18

30.1 %
78 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

29._MO_20

27.3 %
33 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._MO_20

23.5 %
34 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998