SNP Profiles of MO20   View Data

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 Key

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_Input profile
GGCTATAGCTCCCTCTCGCGAATTGGCT
1._GC-08-167-4-10
CCCTATAGCTCCCTCTCGCGAATTGGCT
2._GC-01-121-6-18
CCCTATAGCTCCCTCTCGCGAATTGGCT
3._GC-01-121-6-18
CCCTATAGCTCCCTCTCGCGAATTGGCT
4._GC-01-121-6-18
CCCTATAGCTCCCTCTCGCGAATTGGCT
5._GC-01-121-6-18
CCCTATAGCTCCCTCTCGCGAATTGGCT
6._GC-01-121-6-18
CCCTATAGCTCCCTCTCGCGAATTGGCT
7._GC-08-167-4-10
CCCTATAGCTCCCTCTCGCGAATTGGCT
8._GC-08-167-4-10
CCCTATAGCTCCCTCTCGCGAATTGGCT
9._GC-08-167-4-10
CCCTATAGCTCCCTCTCGCGAATTGGCT
10._GC-01-121-6-18
CC_ATAGCTCCCTCTCGCGAATTGGCT
11._MO_20
CC___CT_CTCT_CG____
12._MO_20
CC___CT_CTCT_CG____
13._MO_20
CC___CT_CTCT_CG____
14._MO_20
CC___CT_CTCT_CG____
15._MO_20
CC___CT_CTCT_CG____
16._MO_20
CC___CT_CTCT_CG____
17._MO_20
CC___CT_CTCT_CG____
18._MO_20
CC___CT_CTCT_CG____
19._MO_20
CC___CT_CTCT_CG____
20._MO_20
CC___CT_CTCT_CG____
21._MO_20
CC___CT_CTCT_CG____
22._RUQ_1566
CC________CG___CT
23._RUQ_1566
GGAG_AGAG_AGAG_CGAAAA_AG
24._MITC-000675
GGAG_AGAG_AGAG_CGAAAA_AG
25._MO_20_Fld#_171_Plt#_1
GGAG_AGAG_AGAG_CGAAAA_AG
26._RUQ_1566
-CC-GG-__---___-
27._MO_20
CG___CC_CTCC_GG____
28._GC-01-121-6-18
CGCCTTGGCCCCCTCCCCGG_GGAACC
29._MO_20
CC___CC_TTTT_CC____
30._MO_20_Fld#_74_Plt#_1
CCAG_AGAG_AAGG_CCGGAC_AG
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_Input profile
CCCGCCCCAAAGAGGGACGGCTCCX_XX_X
1._GC-08-167-4-10
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
2._GC-01-121-6-18
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
3._GC-01-121-6-18
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
4._GC-01-121-6-18
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
5._GC-01-121-6-18
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
6._GC-01-121-6-18
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
7._GC-08-167-4-10
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
8._GC-08-167-4-10
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
9._GC-08-167-4-10
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
10._GC-01-121-6-18
CCCGCGCCAAAGAGCCACGGCTACX_XX_X
11._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
12._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
13._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
14._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
15._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
16._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
17._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
18._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
19._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
20._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
21._MO_20
CCCG__AA_AGCCAC_CTACX_XX_X
22._RUQ_1566
CCCG____AG____ACX_XX_X
23._RUQ_1566
CCCGCGGGAAAGAGGGACGGAG_X_XX_X
24._MITC-000675
CCCGCGGGAAAGAGGGACGGAG_X_XX_X
25._MO_20_Fld#_171_Plt#_1
CCCGCGGGAAAGAGGGACGGAGACX_XX_X
26._RUQ_1566
CC--_---CC----X_XX_X
27._MO_20
ACCC__AA_GGCCAA_TTAAX_XX_X
28._GC-01-121-6-18
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
29._MO_20
CCGG__TT_AACCCC_TTCCX_XX_X
30._MO_20_Fld#_74_Plt#_1
CCCCCGAGATGGAAGGAAAGAGCCX_XX_X

Input profile: MO_20 RUQ_1566

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._MO_20 GC-08-167-4-10

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._MO_20 GC-01-121-6-18

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._MO_20 GC-01-121-6-18

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._MO_20 GC-01-121-6-18

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._MO_20 GC-01-121-6-18

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._MO_20 GC-01-121-6-18

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._MO_20 GC-08-167-4-10

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._MO_20 GC-08-167-4-10

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._MO_20 GC-08-167-4-10

88.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._MO_20 GC-01-121-6-18

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

11._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

13._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

14._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

15._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

16._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

17._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

18._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

19._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

20._MO_20

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

21._MO_20

80.8 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

22._MO_20 RUQ_1566

78.6 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._MO_20 RUQ_1566

59.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._MO_20 MITC-000675

59.5 %
21 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

25._MO_20 MO_20_Fld#_171_Plt#_1

59.1 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

26._MO_20 RUQ_1566

50 %
4 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._MO_20

50 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._MO_20 GC-01-121-6-18

50 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

29._MO_20

46.2 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

30._MO_20 MO_20_Fld#_74_Plt#_1

36.4 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144