SNP Profiles of NA26   View Data

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 Key

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_Input profile
CGCCTTGGCTCGCTCCGGGGGGTTAACC
1._NA_26
CG___CT_CTCC_CC____
2._NA_26
CG___CT_CTCC_CC____
3._NA_26
CG___CT_CTCC_CC____
4._NA_26
CG___CT_CTCC_CC____
5._NA_26
CG___CT_CTCC_CC____
6._RUQ_1230
CG___CT_CTCC_CC____
7._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC_TTAACC
8._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC_TTAACC
9._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC_TTAACC
10._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC_TTAACC
11._GC-04-021-2-03
CGCCTTGGCTCGCTCCCCCC_TTAACC
12._RUQ_1230
CGCCTTGGCT__CCCCCC___CC
13._RUQ_1230
CG________CC___CC
14._NA_26
CG___CC_TTTT_CC____
15._RUQ_1230
CGGG_GGAG_AGGG_GGGGAA_GG
16._MITC-000034
CGGG_GGAG_AGGG_GGGGAA_GG
 151617181920212223242526  
_Input profile
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
1._NA_26
ACGG__AT_AGCGAA_CTACX_XX_X
2._NA_26
ACGG__AT_AGCGAA_CTACX_XX_X
3._NA_26
ACGG__AT_AGCGAA_CTACX_XX_X
4._NA_26
ACGG__AT_AGCGAA_CTACX_XX_X
5._NA_26
ACGG__AT_AGCGAA_CTACX_XX_X
6._RUQ_1230
ACGG__AT_AGCGAA_CTACX_XX_X
7._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
8._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
9._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
10._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
11._GC-04-021-2-03
ACGGCCCTATGGAGCGAAGGCTACX_XX_X
12._RUQ_1230
ACGGCC_ATGGAGCGAAGGCTACX_XX_X
13._RUQ_1230
ACGG____AG____ACX_XX_X
14._NA_26
ACGG__AT_AGGGAC_CTCCX_XX_X
15._RUQ_1230
ACGGGGAGATGGAGCGAAGGAGACX_XX_X
16._MITC-000034
ACGGGGAGATGGAGCGAAGGAGACX_XX_X

Input profile: NA_26 RUQ_1230

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._NA_26

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

2._NA_26

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

3._NA_26

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

4._NA_26

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

5._NA_26

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
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 Dapeng Zhang, 2016

6._NA_26 RUQ_1230

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._NA_26 GC-04-021-2-03

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

8._NA_26 GC-04-021-2-03

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

9._NA_26 GC-04-021-2-03

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

10._NA_26 GC-04-021-2-03

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

11._NA_26 GC-04-021-2-03

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._NA_26 RUQ_1230

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._NA_26 RUQ_1230

85.7 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._NA_26

65.4 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

15._NA_26 RUQ_1230

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._NA_26 MITC-000034

59.1 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144