SNP Profiles of PA 137 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGCCTTGGCCCCCTCCGGCCAGGTAATT
1._PA_137_[PER]___
____TTGG______CC____________
2._PA_137_[PER]___
CG__________CTCC____________
3._PA_137_[PER]___
CC______CC__CTCC__GG________
4._PA_137_[PER]___
CC______CC__CTCC__GG________
5._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
6._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
7._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
8._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
9._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
10._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
11._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
12._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
13._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
14._PA_137_[PER]___
CCCCTTGGCCCCCTCCCCGGAAGTAATT
15._PA_137_[PER]___
CCCCTTGGCC____CCCCGG______TT
16._PA_137_[PER]___
CC______CC__CTCC__GG________
17._PA_137_[PER]___
CC______CC__CTCC__GG________
18._PA_137_[PER]___
CC______CC__CTCC__GG________
19._PA_137_[PER]___
CC______CC__CTCC__GG________
20._PA_137_[PER]___
CC______CC__CTCCCCGG________
21._PA_137_[PER]___
CC______CC__CTCC__GG________
22._PA_137_[PER]___
CC______CC__CTCC__GG________
23._PA_137_[PER]___
CC______CC__CTCC__GG________
24._PA_137_[PER]___
CC______CC__CTCC__GG________
25._PA_137_[PER]___
CC______CC__CTCC__GG________
26._PA_137_[PER]___
CC______CC__CTCC__GG________
27._PA_137_[PER]___
CC______CC__CTCC__GG________
28._PA_137_[PER]___
CC______CC__CTCC__GG________
29._PA_137_[PER]___
CC______CC__CTCC__GG________
30._PA_137_[PER]___
CC______CC__CTCC__GG________
31._PA_137_[PER]___
CC________________GG______TT
32._PA_137_[PER]___
CC________________GG______TT
33._PA_137_[PER]___
GGGG__GGGG__AGGG__CCAGAC__AA
34._PA_137_[PER]___
GGGG__GGGG__AGGG__CCAGAC__AA
35._PA_137_[PER]___
GGGG__GGGG__AGGG__CCAGAC__AA
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
CCCGCCCCAAGGAGGGACGGCTACX_XX_X
1._PA_137_[PER]___
__CGCC__AA__AG__AC____ACX_XX_X
2._PA_137_[PER]___
__CG____AA__AGCGAC__CTACX_XX_X
3._PA_137_[PER]___
CCCG____AA__AG__AC__CTACX_XX_X
4._PA_137_[PER]___
CCCG____AA__AG__AC__CTACX_XX_X
5._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
6._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
7._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
8._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
9._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
10._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
11._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
12._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
13._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
14._PA_137_[PER]___
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
15._PA_137_[PER]___
CCCGCC__AAGGAGCCACGGCTACX_XX_X
16._PA_137_[PER]___
CCCG____AA__AGCCAC__CTACX_XX_X
17._PA_137_[PER]___
CCCG____AA__AGCCAC__CTACX_XX_X
18._PA_137_[PER]___
CCCG____AA__AGCCAC__CTACX_XX_X
19._PA_137_[PER]___
CCCG____AA__AGCCAC__CTACX_XX_X
20._PA_137_[PER]___
CCCG____AA__AG__AC__CTACX_XX_X
21._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
22._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
23._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
24._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
25._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
26._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
27._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
28._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
29._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
30._PA_137_[PER]___
CCCG____AA__AGCCAA__CTACX_XX_X
31._PA_137_[PER]___
CCCG________AG________ACX_XX_X
32._PA_137_[PER]___
CCCG________AG________ACX_XX_X
33._PA_137_[PER]___
CCCGGGGGAAGGAGGGACGGAGACX_XX_X
34._PA_137_[PER]___
CCCGGGGGAAGGAGGGACGGAGACX_XX_X
35._PA_137_[PER]___
CCCGGGGGAAGGAGGGACGGAGACX_XX_X

Input profile: PA_137_[PER] PA137[PER]

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_137_[PER] RUQ_36

identical
9 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER] RUQ_36

90 %
10 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_137_[PER]

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

11._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._PA_137_[PER] RUQ_1081

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_137_[PER] RUQ_36

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._PA_137_[PER] RUQ_1081

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._PA_137_[PER] RUQ_1081

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._PA_137_[PER]

76.9 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

20._PA_137_[PER]

76.9 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

21._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

23._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

24._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

25._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

26._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

27._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

28._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

29._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

30._PA_137_[PER]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

31._PA_137_[PER] RUQ_1081

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._PA_137_[PER] RUQ_36

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

33._PA_137_[PER] RUQ_36

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

59.1 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

59.1 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144