SNP Profiles of PA137[PER]   View Data

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 Key

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_Input profile
GGCCTTGGCCCCCTCCGGCCAGGTAATT
1._RUQ_36
--TTGG-__CC--___-
2._RUQ_36
CG_____CTCC______
3._PA_137_[PER]
CC___CC_CTCC_GG____
4._PA_137_[PER]
CC___CC_CTCC_GG____
5._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
6._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
7._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
8._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
9._GC-05-009-1-09
CCCCTTGGCCCCCTCCCCGGAAGTAATT
10._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
11._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
12._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
13._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
14._GC-05-117-3-19
CCCCTTGGCCCCCTCCCCGGAAGTAATT
15._RUQ_1081
CCCCTTGGCC__CCCCGG___TT
16._RUQ_36
CC___CC_CTCC_GG____
17._RUQ_1081
CC___CC_CTCC_GG____
18._RUQ_1081
CC___CC_CTCC_GG____
19._PA_137_[PER]
CC___CC_CTCC_GG____
20._PA_137_[PER]
CC___CC_CTCCCCGG____
21._PA_137_[PER]
CC___CC_CTCC_GG____
22._PA_137_[PER]
CC___CC_CTCC_GG____
23._PA_137_[PER]
CC___CC_CTCC_GG____
24._PA_137_[PER]
CC___CC_CTCC_GG____
25._PA_137_[PER]
CC___CC_CTCC_GG____
26._PA_137_[PER]
CC___CC_CTCC_GG____
27._PA_137_[PER]
CC___CC_CTCC_GG____
28._PA_137_[PER]
CC___CC_CTCC_GG____
29._PA_137_[PER]
CC___CC_CTCC_GG____
30._PA_137_[PER]
CC___CC_CTCC_GG____
31._RUQ_1081
CC________GG___TT
32._RUQ_36
GGGG_GGGG_AGGG_CCAGAC_AA
33._MITC-000400
GGGG_GGGG_AGGG_CCAGAC_AA
34._PA_137_[PER]_Fld#_201_Plt#_2
GGGG_GGGG_AGGG_CCAGAC_AA
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_Input profile
CCCGCCCCAAGGAGGGACGGCTACX_XX_X
1._RUQ_36
-CGCC_AA-AG-AC--ACX_XX_X
2._RUQ_36
_CG__AA_AGCGAC_CTACX_XX_X
3._PA_137_[PER]
CCCG__AA_AG_AC_CTACX_XX_X
4._PA_137_[PER]
CCCG__AA_AG_AC_CTACX_XX_X
5._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
6._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
7._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
8._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
9._GC-05-009-1-09
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
10._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
11._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
12._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
13._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
14._GC-05-117-3-19
CCCGCCCCAAGGAGCCAAGGCTACX_XX_X
15._RUQ_1081
CCCGCC_AAGGAGCCACGGCTACX_XX_X
16._RUQ_36
CCCG__AA_AGCCAC_CTACX_XX_X
17._RUQ_1081
CCCG__AA_AGCCAC_CTACX_XX_X
18._RUQ_1081
CCCG__AA_AGCCAC_CTACX_XX_X
19._PA_137_[PER]
CCCG__AA_AGCCAC_CTACX_XX_X
20._PA_137_[PER]
CCCG__AA_AG-AC_CTACX_XX_X
21._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
22._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
23._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
24._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
25._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
26._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
27._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
28._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
29._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
30._PA_137_[PER]
CCCG__AA_AGCCAA_CTACX_XX_X
31._RUQ_1081
CCCG____AG____ACX_XX_X
32._RUQ_36
CCCGGGGGAAGGAGGGACGGAGACX_XX_X
33._MITC-000400
CCCGGGGGAAGGAGGGACGGAGACX_XX_X
34._PA_137_[PER]_Fld#_201_Plt#_2
CCCGGGGGAAGGAGGGACGGAGACX_XX_X

Input profile: PA_137_[PER] PA137[PER]

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_137_[PER] RUQ_36

identical
9 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER] RUQ_36

90 %
10 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_137_[PER]

83.3 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

83.3 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._PA_137_[PER] GC-05-009-1-09

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

11._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._PA_137_[PER] GC-05-117-3-19

80.8 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._PA_137_[PER] RUQ_1081

80 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_137_[PER] RUQ_36

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._PA_137_[PER] RUQ_1081

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._PA_137_[PER] RUQ_1081

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._PA_137_[PER]

76.9 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

20._PA_137_[PER]

76.9 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

21._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

22._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

24._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

25._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

26._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

27._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

28._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

29._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

30._PA_137_[PER]

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

31._PA_137_[PER] RUQ_1081

71.4 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._PA_137_[PER] RUQ_36

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

33._PA_137_[PER] MITC-000400

59.1 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

34._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

59.1 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144