SNP Profiles of PA 88 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGTTTTGGCCCCCTCCGGCCGGGTAACT
1._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
2._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
3._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
4._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
5._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
6._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
7._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
8._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
9._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
10._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GTAACT
11._PA_88_[PER]___
CGTTTTGGCCCCCTCCCCGG__GGAACT
12._PA_88_[PER]___
CG________________GG______CT
13._PA_88_[PER]___
CGTTTTGGCC____CCCCGG______CT
14._PA_88_[PER]___
CG______CC__CTCC__GG________
15._PA_88_[PER]___
CG______CC__CTCC__GG________
16._PA_88_[PER]___
CG______CC__CTCC__GG________
17._PA_88_[PER]___
CG______CC__CTCC__GG________
18._PA_88_[PER]___
CG______CC__CTCC__GG________
19._PA_88_[PER]___
CG______CC__CTCC__GG________
20._PA_88_[PER]___
CG______CC__CTCC__GG________
21._PA_88_[PER]___
CG______CC__CTCC__GG________
22._PA_88_[PER]___
CG______CC__CTCC__GG________
23._PA_88_[PER]___
CG______CC__CTCC__GG________
24._PA_88_[PER]___
CG______CC__CTCC__GG________
25._PA_88_[PER]___
CG______CC__CTCC__GG________
26._PA_88_[PER]___
CG______CC__CTCC__GG________
27._PA_88_[PER]___
GG______CC__CTCC__GG________
28._PA_88_[PER]___
GGCTTTAACCCCTTCCCCCG__TTAGCT
29._PA_88_[PER]___
GG______CC__TTCC__CG________
30._PA_88_[PER]___
CGAA__GGGG__AGGG__CCGGAC__AG
31._PA_88_[PER]___
CGAA__GGGG__AGGG__CCGGAC__AG
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
ACCGCCTTAAGGGGGGAAGGCTACX_XX_X
1._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
2._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
3._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
4._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
5._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
6._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
7._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
8._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
9._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
10._PA_88_[PER]___
ACCG__TTAAGGGGCCAAGGCTACX_XX_X
11._PA_88_[PER]___
ACCGCCTTAAGGGGCCAAGGCTACX_XX_X
12._PA_88_[PER]___
ACCG________GG________ACX_XX_X
13._PA_88_[PER]___
ACCGCC__AAGGGGCCAAGGCTACX_XX_X
14._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
15._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
16._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
17._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
18._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
19._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
20._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
21._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
22._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
23._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
24._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
25._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
26._PA_88_[PER]___
ACCG____AA__GGCCAA__CTACX_XX_X
27._PA_88_[PER]___
CCGG____AA__AA__AC____ACX_XX_X
28._PA_88_[PER]___
ACCCCCCCAAGGAACCAAGGCCAAX_XX_X
29._PA_88_[PER]___
ACCC____AA__AACCAA__CCAAX_XX_X
30._PA_88_[PER]___
ACCGGGAAAAGGGGGGAAGGAGACX_XX_X
31._PA_88_[PER]___
ACCGGGAAAAGGGGGGAAGGAGACX_XX_X

Input profile: PA_88_[PER] PA88[PER]

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

4._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

6._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._PA_88_[PER] GC-01-058-3-13

88 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

10._PA_88_[PER] GC-01-058-3-13

87.5 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

11._PA_88_[PER] GC-01-058-3-13

86 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_88_[PER] RUQ_34

85.7 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

13._PA_88_[PER] RUQ_34

85 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 16 > F
 Dapeng Zhang, 2016

15._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 6 > FP
 Dapeng Zhang, 2016

16._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 4 > FP
 Dapeng Zhang, 2016

17._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 1 > FP
 Dapeng Zhang, 2016

18._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 14
 Dapeng Zhang, 2016

19._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 11
 Dapeng Zhang, 2016

20._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 10
 Dapeng Zhang, 2016

21._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 8
 Dapeng Zhang, 2016

22._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 5
 Dapeng Zhang, 2016

23._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 3
 Dapeng Zhang, 2016

24._PA_88_[PER]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 2
 Dapeng Zhang, 2016

25._PA_88_[PER] RUQ_34

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._PA_88_[PER]

84.6 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P50 299
 Dapeng Zhang, 2016

27._PA_88_[PER]

63.6 %
11 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D677
 Dapeng Zhang, 2016

28._PA_88_[PER] GC-01-058-3-13

62 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

29._PA_88_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 13
 Dapeng Zhang, 2016

30._PA_88_[PER] GC-01-58-3-13

59.1 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._PA_88_[PER] RUQ_34

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144