SNP Profiles of "UF 12" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-05-070-2-21	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	AT	AG	AC
2. _GC-05-070-2-21	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	AT	AG	AC
3. _GC-05-070-2-21	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	AT	AG	AC
4. _GC-05-070-2-21	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	AT	AG	AC
5. _GC-05-070-2-21	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	AT	AG	AC
6. _5221_1_>_FP	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
7. _5221_2_>_FP	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
8. _5221_3_>_FP	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
9. _5221_4_>_FP	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
10. _5221_5	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	CC
11. _Cabiria	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
12. _6B_F444_T5	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-05-070-2-21	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
2. _GC-05-070-2-21	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
3. _GC-05-070-2-21	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
4. _GC-05-070-2-21	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
5. _GC-05-070-2-21	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
6. _5221_1_>_FP	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
7. _5221_2_>_FP	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
8. _5221_3_>_FP	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
9. _5221_4_>_FP	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
10. _5221_5	GG	GG	___	CC	___	___	___	AA	___	___	GG	___	___	AG
11. _Cabiria	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
12. _6B_F444_T5	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-05-070-2-21	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG	AG
2. _GC-05-070-2-21	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG	AG
3. _GC-05-070-2-21	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG	AG
4. _GC-05-070-2-21	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG	AG
5. _GC-05-070-2-21	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG	AG
6. _5221_1_>_FP	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___	___
7. _5221_2_>_FP	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___	___
8. _5221_3_>_FP	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___	___
9. _5221_4_>_FP	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___	___
10. _5221_5	___	AC	CT	___	GG	___	GG	AC	___	___	CT	AA	___	___
11. _Cabiria	___	CC	CT	___	GT	___	CC	AC	___	___	CT	AG	___	___
12. _6B_F444_T5	___	CC	CT	___	GT	___	CC	AC	___	___	CT	AG	___	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-05-070-2-21	CT	CT	GT	AG	GT	GT	GT	AC	GG	AA	CG	CG	CC	CC
2. _GC-05-070-2-21	CT	CT	GT	AG	GT	GT	GT	AC	GG	AA	CG	CG	CC	CC
3. _GC-05-070-2-21	CT	CT	GT	AG	GT	GT	GT	AC	GG	AA	CG	CG	CC	CC
4. _GC-05-070-2-21	CT	CT	GT	AG	GT	GT	GT	AC	GG	AA	CG	CG	CC	CC
5. _GC-05-070-2-21	CT	CT	GT	AG	GT	GT	GT	AC	GG	AA	CG	CG	CC	CC
6. _5221_1_>_FP	___	___	GT	___	___	___	___	___	___	___	CG	___	CC	___
7. _5221_2_>_FP	___	___	GT	___	___	___	___	___	___	___	CG	___	CC	___
8. _5221_3_>_FP	___	___	GT	___	___	___	___	___	___	___	CG	___	CC	___
9. _5221_4_>_FP	___	___	GT	___	___	___	___	___	___	___	CG	___	CC	___
10. _5221_5	___	___	GT	___	___	___	___	___	___	___	CG	___	CT	___
11. _Cabiria	___	___	GT	___	___	___	___	___	___	___	CG	___	CC	___
12. _6B_F444_T5	___	___	GT	___	___	___	___	___	___	___	CG	___	CC	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-05-070-2-21	AG	TT	GG	CT	AA	CT	AG	CT	CT	CC	CT	AA	GT	AA
2. _GC-05-070-2-21	AG	TT	GG	CT	AA	CT	AG	CT	CT	CC	CT	AA	GT	AA
3. _GC-05-070-2-21	AG	TT	GG	CT	AA	CT	AG	CT	CT	CC	CT	AA	GT	AA
4. _GC-05-070-2-21	AG	TT	GG	CT	AA	CT	AG	CT	CT	CC	CT	AA	GT	AA
5. _GC-05-070-2-21	AG	TT	GG	CT	AA	CT	AG	CT	CT	CC	CT	AA	GT	AA
6. _5221_1_>_FP	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___	AA
7. _5221_2_>_FP	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___	AA
8. _5221_3_>_FP	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___	AA
9. _5221_4_>_FP	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___	AA
10. _5221_5	___	CT	CG	___	AA	TT	AA	___	___	___	CC	GG	___	AA
11. _Cabiria	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___	AA
12. _6B_F444_T5	___	TT	GG	___	AA	CT	AG	___	___	___	CT	AA	___	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-05-070-2-21	___	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA	GG
2. _GC-05-070-2-21	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA	GG
3. _GC-05-070-2-21	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA	GG
4. _GC-05-070-2-21	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA	GG
5. _GC-05-070-2-21	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA	GG
6. _5221_1_>_FP	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA	___
7. _5221_2_>_FP	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA	___
8. _5221_3_>_FP	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA	___
9. _5221_4_>_FP	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA	___
10. _5221_5	___	___	___	CC	___	___	CT	___	___	GG	TT	___	AA	___
11. _Cabiria	___	___	___	TT	___	___	CT	___	___	GT	CC	___	AA	___
12. _6B_F444_T5	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA	___

	85	86	87	88	89	90	91	92	93	94	95
1. _GC-05-070-2-21	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X	X_X
2. _GC-05-070-2-21	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X	X_X
3. _GC-05-070-2-21	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X	X_X
4. _GC-05-070-2-21	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X	X_X
5. _GC-05-070-2-21	TT	CT	CT	CG	AG	CT	AC	AG	AC	AG	AA	X_X	X_X	X_X
6. _5221_1_>_FP	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X	X_X
7. _5221_2_>_FP	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X	X_X
8. _5221_3_>_FP	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X	X_X
9. _5221_4_>_FP	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X	X_X
10. _5221_5	CT	___	TT	CC	AG	CC	___	___	___	___	___	X_X	X_X	X_X
11. _Cabiria	TT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X	X_X
12. _6B_F444_T5	TT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X	X_X

Mars Center for Cocoa Science Brazil

1._UF_12 GC-05-070-2-21

Location: Tree: 1

Notes: 1 > FP1

2._UF_12 GC-05-070-2-21

Location: Tree: 2

Notes: 2 > FP2

3._UF_12 GC-05-070-2-21

Location: Tree: 3

Notes: 3 > FP3

4._UF_12 GC-05-070-2-21

Location: Tree: 4

Notes: 4 > FP4

5._UF_12 GC-05-070-2-21

Location: Tree: 5

Notes: 5

6._UF_12

Location: 5221 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._UF_12

Location: 5221 2 > FP

Dapeng Zhang, 2016

8._UF_12

Location: 5221 3 > FP

Dapeng Zhang, 2016

9._UF_12

Location: 5221 4 > FP

Dapeng Zhang, 2016

10._UF_12

Location: 5221 5

Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

11._UF_12

Location: Cabiria

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

12._UF_12

Location: 6B F444 T5

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP521	30	TcSNP529
31	TcSNP534	32	TcSNP547	33	TcSNP560	34	TcSNP561	35	TcSNP577
36	TcSNP591	37	TcSNP602	38	TcSNP606	39	TcSNP619	40	TcSNP645
41	TcSNP653	42	TcSNP689	43	TcSNP701	44	TcSNP702	45	TcSNP723
46	TcSNP731	47	TcSNP751	48	TcSNP776	49	TcSNP799	50	TcSNP823
51	TcSNP836	52	TcSNP860	53	TcSNP872	54	TcSNP878	55	TcSNP891
56	TcSNP894	57	TcSNP899	58	TcSNP917	59	TcSNP929	60	TcSNP944
61	TcSNP953	62	TcSNP994	63	TcSNP998	64	TcSNP999	65	TcSNP1034
66	TcSNP1041	67	TcSNP1060	68	TcSNP1062	69	TcSNP1063	70	TcSNP1075
71	TcSNP1096	72	TcSNP1111	73	TcSNP1126	74	TcSNP1144	75	TcSNP1149
76	TcSNP1156	77	TcSNP1165	78	TcSNP1175	79	TcSNP1242	80	TcSNP1253
81	TcSNP1270	82	TcSNP1309	83	TcSNP1350	84	TcSNP1383	85	TcSNP1414
86	TcSNP1439	87	TcSNP1442	88	TcSNP1458	89	TcSNP1484	90	TcSNP1520
91	Tcm001s00947643	92	Tcm002s20575712	93	Tcm003s01336581	94	Tcm003s07402719	95	Tcm006s26664133