SNP Profiles of "IMC 11"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-04-029-2-11
GGGGTTGGCCTTCCTTACGTCTATGGAA
2. _4211_2_>_FP
GG___TT_______________ACGTCT______AA
3. _GC-04-29-2-11
GGCCTTGGGGAACCAAACACAGATGGAC
4. _GC-04-029-2-11
GGGGTTGGCCTTCCTTACGTCTATGGAA
5. _4211_8
GG___TT_______________ACGTCT______AA
6. _GC-04-029-2-11
GGGGTTGGCCTTCCTTACGTCTATGGAA
7. _4211_6_>_FP
GG___TT_______________ACGTCT______AA
8. _GC-04-029-2-11
GGGGTTGGCCTTCCTTACGTCTATGGAA
9. _4211_1_>_FP
GG___TT_______________ACGTCT______AA
10. _GC-04-029-2-11
GGGGTTGGCCTTCCTTACGTCTATGGAA
11. _4211_5
GG___TT_______________ACGTCT______AA
12. _RUQ_8
GG___TT_______________ACGTCT______AC
13. _RUQ_8
GGCCTTGGGGAACCAAACACAGATGGAC
14. _RUQ_8
_______________TTCC___ACGTCT___GGAC
15. _6B_F423_T1
GG___TT_______________ACGTCT______AC
16. _MITC-000647
GGCCTTGGGGAACCAAACACAGATGGAC
17. _IMC_11_Fld#_165_Plt#_2
GGCCTTGGGGAACCAAACACAGATGGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-04-029-2-11
CGAGGGTTAAAGGGAACCAGGGATCCAA
2. _4211_2_>_FP
CGAG___TT_________AA______GG______AA
3. _GC-04-29-2-11
CGAGGGAATTAGGGAAGGAGGGATGG___
4. _GC-04-029-2-11
CGAGGGTTAAAGGGAACCAGGGATCCAA
5. _4211_8
CGAG___TT_________AA______GG______AA
6. _GC-04-029-2-11
CGAGGGTTAAAGGGAACCAGGGATCCAA
7. _4211_6_>_FP
CGAG___TT_________AA______GG______AA
8. _GC-04-029-2-11
CGAGGGTTAAAGGGAACCAGGGATCCAA
9. _4211_1_>_FP
CGAG___TT_________AA______GG______AA
10. _GC-04-029-2-11
CGAGGGTTAAAGGGAACCAGGGATCCAA
11. _4211_5
CGAG___TT_________AA______GG______AA
12. _RUQ_8
CGAG___TT_________AA______AG______AA
13. _RUQ_8
CGAGGGAATTAGGGAAGGAGGGATGG___
14. _RUQ_8
CGAG___TT___AGGGAA____________CCAA
15. _6B_F423_T1
CGAG___TT_________AA______GG______AA
16. _MITC-000647
CGAGGGAATTAGGGAAGGAGGGATGG___
17. _IMC_11_Fld#_165_Plt#_2
CGAGGGAATTAGGGAAGGAGGGATGG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-04-029-2-11
___AA___CTAGGGGGGGAACCAGCCAAAA
2. _4211_2_>_FP
_________CT___GG___GGAA______CCAA___
3. _GC-04-29-2-11
AGAACC___AGCCGGGGAAGG___GG___AA
4. _GC-04-029-2-11
___AACCCTAGGGGGGGAACCAGCCAAAA
5. _4211_8
______CCCT___GG___GGAA______CCAA___
6. _GC-04-029-2-11
___AACCCTAGGGGGGGAACCAGCCAAAA
7. _4211_6_>_FP
______CCCT___GG___GGAA______CCAA___
8. _GC-04-029-2-11
___AACCCTAGGGGGGGAACCAGCCAAAA
9. _4211_1_>_FP
______CCCT___GG___GGAA______CCAA___
10. _GC-04-029-2-11
___AACCCTAGGGGGGGAACCAGCCAAAA
11. _4211_5
______CCCT___GG___GGAA______CCAA___
12. _RUQ_8
______CCCT___GG___GGAA______CCAA___
13. _RUQ_8
AGAACC___AGCCGGGGAAGG___GG___AA
14. _RUQ_8
______CCCT___GG___GGAACC___CC______
15. _6B_F423_T1
______CCCT___GG___GGAA______CCAA___
16. _MITC-000647
AGAACC___AGCCGGGGAAGG___GG___AA
17. _IMC_11_Fld#_165_Plt#_2
AGAACC___AGCCGGGGAAGG___GG___AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-04-029-2-11
AATTCCGGGGTTTTTTACCG___CCCCCC
2. _4211_2_>_FP
_________GG_____________________CC___CC
3. _GC-04-29-2-11
AA______CCGGAAAAAAACCGGGGG___GG
4. _GC-04-029-2-11
AATTCCGGGGTTTTTTACCG___CCCCCC
5. _4211_8
_________GG_____________________CC___CC
6. _GC-04-029-2-11
AATTCCGGGGTTTTTTACCG___CCCCCC
7. _4211_6_>_FP
_________GG_____________________CC___CC
8. _GC-04-029-2-11
AATTCCGGGGTTTTTTACCG___CCCCCC
9. _4211_1_>_FP
_________GG_____________________CC___CC
10. _GC-04-029-2-11
AATTCCGGGGTTTTTTACCG___CCCCCC
11. _4211_5
_________GG_____________________CC___CC
12. _RUQ_8
_________GG_____________________CC___CC
13. _RUQ_8
AA______CCGGAAAAAAACCGGGGG___GG
14. _RUQ_8
______TTGGGG______TTAC______CCCCCC
15. _6B_F423_T1
_________GG_____________________CC___CC
16. _MITC-000647
AA______CCGGAAAAAAACCGGGGG___GG
17. _IMC_11_Fld#_165_Plt#_2
AA______CCGGAAAAAAACCGGGGG___GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-04-029-2-11
CCGGCCGGCCAATTAACCTTCCCTGGGG
2. _4211_2_>_FP
______CCGG___AATTAA_________CTGG___
3. _GC-04-29-2-11
GGGGGGGGGGAAAAAA___AA___AGGGCC
4. _GC-04-029-2-11
CCGGCCGGCCAATTAACCTTCCCTGGGG
5. _4211_8
______CCGG___AATTAA_________CTGG___
6. _GC-04-029-2-11
CCGGCCGGCCAATTAACCTTCCCTGGGG
7. _4211_6_>_FP
______CCGG___AATTAA_________CTGG___
8. _GC-04-029-2-11
CCGGCCGGCCAATTAACCTTCCCTGGGG
9. _4211_1_>_FP
______CCGG___AATTAA_________CTGG___
10. _GC-04-029-2-11
CCGGCCGGCCAATTAACCTTCCCTGGGG
11. _4211_5
______CCGG___AATTAA_________CTGG___
12. _RUQ_8
______CCGG___AATTAA_________CTGG___
13. _RUQ_8
GGGGGGGGGGAAAAAA___AA___AGGGCC
14. _RUQ_8
___-_______________AACC______CT___GG
15. _6B_F423_T1
______CCGG___AATTAA_________CTGG___
16. _MITC-000647
GGGGGGGGGGAAAAAA___AA___AGGGCC
17. _IMC_11_Fld#_165_Plt#_2
GGGGGGGGGGAAAAAA___AA___AGGGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-04-029-2-11
AACCGGTTCCTTCTCCGGCCGTTTTTCC
2. _4211_2_>_FP
AA_________CC______CC______GTTT___CC
3. _GC-04-29-2-11
AAGGGG______AAAG___CC___AAAAAACC
4. _GC-04-029-2-11
AACCGGTTCCTTCTCCGGCCGTTTTTCC
5. _4211_8
AA_________CC______CC______GTTT___CC
6. _GC-04-029-2-11
AACCGGTTCCTTCTCCGGCCGTTTTTCC
7. _4211_6_>_FP
AA_________CC______CC______GTTT___CC
8. _GC-04-029-2-11
AACCGGTTCCTTCTCCGGCCGTTTTTCC
9. _4211_1_>_FP
AA_________CC______CC______GTTT___CC
10. _GC-04-029-2-11
AACCGGTTCCTTCTCCGGCCGTTTTTCC
11. _4211_5
AA_________CC______CC______GTTT___CC
12. _RUQ_8
AA_________CC______CC______GTTT___CC
13. _RUQ_8
AAGGGG______AAAG___CC___AAAAAACC
14. _RUQ_8
______GGTT__________________GT___TT___
15. _6B_F423_T1
AA_________CC______CC______GTTT___CC
16. _MITC-000647
AAGGGG______AAAG___CC___AAAAAACC
17. _IMC_11_Fld#_165_Plt#_2
AAGGGG______AAAG___CC___AAAAAACC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-04-029-2-11
GGTTCCTTCGAGCCACAGAAAAACX_XX_X
2. _4211_2_>_FP
___TT___TTCGAGCC_______________X_XX_X
3. _GC-04-29-2-11
GGAAGGAACGAGGGAC___AAAAACX_XX_X
4. _GC-04-029-2-11
GGTTCCTTCGAGCCACAGAAAAACX_XX_X
5. _4211_8
___TT___TTCGAGCC_______________X_XX_X
6. _GC-04-029-2-11
GGTTCCTTCGAGCCACAGAAAAACX_XX_X
7. _4211_6_>_FP
___TT___TTCGAGCC_______________X_XX_X
8. _GC-04-029-2-11
GGTTCCTTCGAGCCACAGAAAAACX_XX_X
9. _4211_1_>_FP
___TT___TTCGAGCC_______________X_XX_X
10. _GC-04-029-2-11
GGTTCCTTCGAGCCACAGAAAAACX_XX_X
11. _4211_5
___TT___TTCGAGCC_______________X_XX_X
12. _RUQ_8
___TT___TTCGAGCC_______________X_XX_X
13. _RUQ_8
GGAAGGAACGAGGGAC___AAAAACX_XX_X
14. _RUQ_8
______CCTTCGAG__________________X_XX_X
15. _6B_F423_T1
___TT___TTCGAGCC_______________X_XX_X
16. _MITC-000647
GGAAGGAACGAGGGAC___AAAAACX_XX_X
17. _IMC_11_Fld#_165_Plt#_2
GGAAGGAACGAGGGAC___AAAAACX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._IMC_11 GC-04-029-2-11
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018
2._IMC_11
Location: 4211 2 > FP
 Dapeng Zhang, 2016
3._IMC_11 GC-04-29-2-11
Location: Field: 4, Block: 2, Rep: 11, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
4._IMC_11 GC-04-029-2-11
Location: Tree: 8
Notes: 8
 Mars, 2018
5._IMC_11
Location: 4211 8
 Dapeng Zhang, 2016
6._IMC_11 GC-04-029-2-11
Location: Tree: 5
Notes: 5
 Mars, 2018
7._IMC_11
Location: 4211 6 > FP
 Dapeng Zhang, 2016
8._IMC_11 GC-04-029-2-11
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
9._IMC_11
Location: 4211 1 > FP
 Dapeng Zhang, 2016
10._IMC_11 GC-04-029-2-11
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018
11._IMC_11
Location: 4211 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

12._IMC_11 RUQ 8
 Dapeng Zhang, 2016
13._IMC_11 RUQ 8
Notes: Reading_Collection
 Mars, 2018
14._IMC_11 RUQ 8
 Dapeng Zhang, 2014

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

15._IMC_11
Location: 6B F423 T1
 Dapeng Zhang, 2016

USDA-SHRS United States of America

16._IMC_11 MITC-000647
 Mars, 2018

USDA-TARS United States of America

17._IMC_11 IMC 11_Fld#_165_Plt#_2
Location: Field: 165, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133