SNP Profiles matching PA 156 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGAACCAACCGGGGAACC
1._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
2._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
3._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
4._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
5._RUQ_1531
__ACGGCC_AACCAACC__AA_
6._PA_156_[PER]
__ACGGCC_AACCAACC__AA_
7._PA_186_[PER]
__ACGGCC_AACCAACC__AA_
8._PA_156_[PER]
__ACGG__AACCAACC__AA_
9._PA_156_[PER]
__ACGGCC_AA_AACC__AA_
10._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
11._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
12._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
13._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
14._GC-05-137-3-39
TTCCACGG_GGAACCAACCGGGGAACC
15._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
16._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
17._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
18._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
19._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
20._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
21._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
22._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
23._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
24._PA_72_[PER]
__ACGTCC_AACCAGCC__AA_
25._EET_400_[ECU]
__ACGGCT_ACCCAACC__AA_
26._RUQ_1569
TTCCACGGCCGGAACCAGCCGGGGAACC
27._RUQ_1564
TTCCACGGCCGGAACCAGCCGGGGAACC
28._GC-07-087-5-22
TTCCACGTCCGGAACCAGCCGGGGAACC
29._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
30._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
31._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
32._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
33._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
34._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
35._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
36._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
37._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
38._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
39._RUQ_1567
TTCCACGGCCGGAACCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AAACCCTTCGCCTTTTCTGGGGTTACGG
1._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
2._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
3._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
4._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
5._RUQ_1531
AAACCCTTCGCC_TT_GG___GG
6._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
7._PA_186_[PER]
AAACCCTTCGCC_TT_-___GG
8._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
9._PA_156_[PER]
AAACCCTTCGCC_TT_GG___GG
10._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
11._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
12._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
13._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
14._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
15._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
16._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
17._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
18._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
19._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
20._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
21._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
22._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
23._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
24._PA_72_[PER]
AAACCTGTCGCC_TT_GG___GG
25._EET_400_[ECU]
AAACCCTTGGCC_TT_GG___GG
26._RUQ_1569
AAACCTGTCGCCTTTTCTGGGGTTAAGG
27._RUQ_1564
AAACCTGTCGCCTTTTCTGGGGTTAAGG
28._GC-07-087-5-22
AAACCTTTCCACTTTTCTGGGGTTAAGG
29._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
30._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
31._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
32._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
33._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
34._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
35._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
36._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
37._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
38._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
39._RUQ_1567
AACCCTTTCGACCTTTCCGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCGGAGCCGGGGTTTTTTCTCTGGAG
1._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
2._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
3._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
4._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
5._RUQ_1531
_CC_AGCC___TT__CTGGAG
6._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
7._PA_186_[PER]
CCCC_AGCC___TT__CTGGAG
8._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
9._PA_156_[PER]
_CC_AGCC___TT__CTGGAG
10._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
11._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
12._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
13._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
14._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
15._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
16._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
17._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
18._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
19._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
20._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
21._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
22._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
23._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
24._PA_72_[PER]
_CC_AGCC___TT__CTGGAG
25._EET_400_[ECU]
_CC_AGCC___TT__CCGGAG
26._RUQ_1569
CCCC-AGCCGGGGTTTTCTCTCCCGAG
27._RUQ_1564
CCCC-AGCCGGGGTTTTCTCTCCCGAG
28._GC-07-087-5-22
CCCCAGAGCCGGGGTTTTTTCTCCGGAG
29._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
30._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
31._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
32._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
33._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
34._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
35._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
36._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
37._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
38._GC-08-051-1-62
CCCCGGAGCCGGGGTTTT_CCCTGGAG
39._RUQ_1567
CCCC-AGCCGGGGTTTTCTCTCTGGAG

Input profile: PA_156_[PER] RUQ_1531

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_156_[PER]

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

5._PA_156_[PER] RUQ_1531

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

7._PA_186_[PER]

identical
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

8._PA_156_[PER]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

10._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._PA_72_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._PA_72_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

17._PA_72_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

18._PA_72_[PER]

91.7 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

19._PA_72_[PER]

91.7 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

20._PA_72_[PER]

91.7 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

21._PA_72_[PER]

91.7 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

22._PA_72_[PER]

91.7 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

23._PA_72_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

24._PA_72_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

25._EET_400_[ECU]

91.7 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

26._CRUZ_7_/14 RUQ_1569

91.5 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._PA_71_[PER] RUQ_1564

91.5 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._EQX_/O_[CHA] GC-07-087-5-22

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

29._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

32._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

33._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

34._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

35._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

36._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

37._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

38._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._PA_39_[PER] RUQ_1567

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484