SNP Profiles of "EQX /O [CHA]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-07-077-4-21
GGGGTTGGTTTTACCTACGTCCAAGGAA
2. _GC-07-077-4-21
GGGGATGGCCTTCCTTCCGGCCAAGGCC
3. _GC-07-077-4-21
GGGGTTGGTTTTACCTACGTCCAAGGAA
4. _GC-07-087-5-22
GGGGATGGCCTTCCTTACGTCCAAGGAA
5. _GC-07-087-5-22
GGGGTTGGTTTTACCTACGTCCAAGGAA
6. _GC-07-087-5-22
GGGGTTGGTTTTACCTACGTCCAAGGAA
7. _7421_1
GG___TT_______________ACGTCC______AA
8. _7421_3
GG___TT_______________ACGTCC______AA
9. _7522_2_>_FP
GG___TT_______________ACGTCC______AA
10. _7522_4_>_FP
GG___TT_______________ACGTCC______AA
11. _7522_1_>_FP
GG___AT_______________ACGTCC______AA
12. _7421_2
GG___AT_______________CCGGCC______CC
13. _RUQ_138
_______________CTCC___ACGGTT___GGCC
14. _RUQ_138
GG___AA_______________ACGGTT______CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-07-077-4-21
CCGGGGCCATGGAGAACTAGGGTTCCAG
2. _GC-07-077-4-21
CCAGGGCCAAGGGGAATTGGGGTTCCAA
3. _GC-07-077-4-21
CCGGGGCCATGGAGAACTAGGGTTCCAG
4. _GC-07-087-5-22
CCAGGGCCAAGGGGAATTGGGGATCCAA
5. _GC-07-087-5-22
CCGGGGCCATGGAGAACTAGGGTTCCAG
6. _GC-07-087-5-22
CCGGGGCCATGGAGAACTAGGGTTCCAG
7. _7421_1
CCGG___CC_________AA______GG______AG
8. _7421_3
CCGG___CC_________AA______GG______AG
9. _7522_2_>_FP
CCGG___CC_________AA______GG______AG
10. _7522_4_>_FP
CCGG___CC_________AA______GG______AG
11. _7522_1_>_FP
CCAG___CC_________AA______GG______AA
12. _7421_2
CCAG___CC_________AA______GG______AA
13. _RUQ_138
CGAA___CC___GGGGAT____________CCAG
14. _RUQ_138
CGAA___CC_________AT______AG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-07-077-4-21
CCCCTTGGTTAACGACCTAGTTGGAGAG
2. _GC-07-077-4-21
CCACCCAAGTAGCGCCCCAATTAGAAAA
3. _GC-07-077-4-21
CCCCTTGGTTAACGACCTAGTTGGAGAG
4. _GC-07-087-5-22
CCACCTAGTTAGCCACTTAATTAGAAAA
5. _GC-07-087-5-22
CCCCTTGGTTAACGACCTAGTTGGAGAG
6. _GC-07-087-5-22
CCCCTTGGTTAACGACCTAGTTGGAGAG
7. _7421_1
___CCTT___TT___CGAC______TTGG______
8. _7421_3
___CCTT___TT___CGAC______TTGG______
9. _7522_2_>_FP
___CCTT___TT___CGAC______TTGG______
10. _7522_4_>_FP
___CCTT___TT___CGAC______TTGG______
11. _7522_1_>_FP
___ACCT___TT___CCAC______TTAG______
12. _7421_2
___ACCC___GT___CGCC______TTAG______
13. _RUQ_138
___ACCT___GT___CGACCT___CT_________
14. _RUQ_138
___ACCT___GT___GGAC______CTAA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-07-077-4-21
CTCCGTGGGTGTTTAAGGAACCCGCCCC
2. _GC-07-077-4-21
TTCTGGAGTTGGTTAACC___GGCCCCCC
3. _GC-07-077-4-21
CTCCGTGGGTGTTTAAGGAACCCGCCCC
4. _GC-07-087-5-22
TTCTGGGGGTGTTTAAGG___GGCCCCCC
5. _GC-07-087-5-22
CTCCGTGGGTGTTTAAGGAACCCGCCCC
6. _GC-07-087-5-22
CTCCGTGGGTGTTTAAGGAACCCGCCCC
7. _7421_1
______GT_____________________CC___CC___
8. _7421_3
______GT_____________________CC___CC___
9. _7522_2_>_FP
______GT_____________________CC___CC___
10. _7522_4_>_FP
______GT_____________________CC___CC___
11. _7522_1_>_FP
______GG_____________________GG___CC___
12. _7421_2
______GG_____________________GG___CC___
13. _RUQ_138
___CTGTAG______TTCC______CG___CT___
14. _RUQ_138
______GT_____________________CG___CT___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-07-077-4-21
AGTTGGCTAATTAGCTTTCCCTAAGTAA
2. _GC-07-077-4-21
GGCTCCCCAACT___CCTTCCCCAGGGAA
3. _GC-07-077-4-21
AGTTGGCTAATTAGCTTTCCCTAAGTAA
4. _GC-07-087-5-22
AGCTGGCCAACTAGCTTTCCCCAAGGAA
5. _GC-07-087-5-22
AGTTGGCTAATTAGCTTTCCCTAAGTAA
6. _GC-07-087-5-22
AGTTGGCTAATTAGCTTTCCCTAAGTAA
7. _7421_1
___TTGG___AATTAG_________CTAA___AA
8. _7421_3
___TTGG___AATTAG_________CTAA___AA
9. _7522_2_>_FP
___TTGG___AATTAG_________CTAA___AA
10. _7522_4_>_FP
___TTGG___AATTAG_________CTAA___AA
11. _7522_1_>_FP
___CTGG___AACTAG_________CCAA___AA
12. _7421_2
___CTCC___AACT____________CCAG___AA
13. _RUQ_138
__________________AACC______CC___GG___
14. _RUQ_138
___TTGG___AATTAA_________CCAG___AA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-07-077-4-21
CCAAATTTTTTTCCGGCCTTCCTTAAGG
2. _GC-07-077-4-21
CCGGTTCCTTTTCCGTCCTTCCTTACGG
3. _GC-07-077-4-21
CCAAATTTTTTTCCGGCCTTCCTTAAGG
4. _GC-07-087-5-22
CCGGTTCTTTTTCCGTCCTTCCTTACGG
5. _GC-07-087-5-22
CCAAATTTTTTTCCGGCCTTCCTTAAGG
6. _GC-07-087-5-22
CCAAATTTTTTTCCGGCCTTCCTTAAGG
7. _7421_1
_________TT______CC______TTCC___AA___
8. _7421_3
_________TT______CC______TTCC___AA___
9. _7522_2_>_FP
_________TT______CC______TTCC___AA___
10. _7522_4_>_FP
_________TT______CC______TTCC___AA___
11. _7522_1_>_FP
_________CT______CC______TTCC___AC___
12. _7421_2
_________CC______CC______TTCC___AC___
13. _RUQ_138
___AGTT__________________TT___CT______
14. _RUQ_138
_________CC______CT______TTCT___AC___
 85 86 87 88 89 90 91 92 93 94 95    
1. _GC-07-077-4-21
TTTTCTGGAATTCCAACCAGAAX_XX_XX_X
2. _GC-07-077-4-21
TTCCCCGGGGCCAAAACCAGCCX_XX_XX_X
3. _GC-07-077-4-21
TTTTCTGGAATTCCAACCAGAAX_XX_XX_X
4. _GC-07-087-5-22
TTCTCCGGAGCTACAAACAAAAX_XX_XX_X
5. _GC-07-087-5-22
TTTTCTGGAATTCCAACCAGAAX_XX_XX_X
6. _GC-07-087-5-22
TTTTCTGGAATTCCAACCAGAAX_XX_XX_X
7. _7421_1
TT___CTGGAATT_______________X_XX_XX_X
8. _7421_3
TT___CTGGAATT_______________X_XX_XX_X
9. _7522_2_>_FP
TT___CTGGAATT_______________X_XX_XX_X
10. _7522_4_>_FP
TT___CTGGAATT_______________X_XX_XX_X
11. _7522_1_>_FP
TT___CCGGAGCT_______________X_XX_XX_X
12. _7421_2
TT___CCGGGGCC_______________X_XX_XX_X
13. _RUQ_138
___CCTT___AG__________________X_XX_XX_X
14. _RUQ_138
TT___TTCCAGCC_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._EQX_/O_[CHA] GC-07-077-4-21
Location: Tree: 1
Notes: 1
 Mars, 2018
2._EQX_/O_[CHA] GC-07-077-4-21
Location: Tree: 2
Notes: 2
 Mars, 2018
3._EQX_/O_[CHA] GC-07-077-4-21
Location: Tree: 3
Notes: 3
 Mars, 2018
4._EQX_/O_[CHA] GC-07-087-5-22
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
5._EQX_/O_[CHA] GC-07-087-5-22
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
6._EQX_/O_[CHA] GC-07-087-5-22
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018
7._EQX_/O_[CHA]
Location: 7421 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
8._EQX_/O_[CHA]
Location: 7421 3
 Dapeng Zhang, 2016
9._EQX_/O_[CHA]
Location: 7522 2 > FP
 Dapeng Zhang, 2016
10._EQX_/O_[CHA]
Location: 7522 4 > FP
 Dapeng Zhang, 2016
11._EQX_/O_[CHA]
Location: 7522 1 > FP
 Dapeng Zhang, 2016
12._EQX_/O_[CHA]
Location: 7421 2
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

13._EQX_/O_[CHA] RUQ 138
 Dapeng Zhang, 2014
14._EQX_/O_[CHA] RUQ 138
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133